Definition Shigella boydii Sb227, complete genome.
Accession NC_007613
Length 4,519,823

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The map label for this gene is yfaA [H]

Identifier: 82544526

GI number: 82544526

Start: 2042810

End: 2043253

Strand: Direct

Name: yfaA [H]

Synonym: SBO_2066

Alternate gene names: 82544526

Gene position: 2042810-2043253 (Clockwise)

Preceding gene: 82544525

Following gene: 82544527

Centisome position: 45.2

GC content: 48.65

Gene sequence:

>444_bases
TTGGCTGTGCCCGTAAAAAATGGCTGGCTATACACAAGGAATGTGGCAATGAGTGGTGAAAAAAAGGCGAAAGGCTGGCG
GTTCTATGGTCTTGTAGGTTTTGGCGCAATAGTACTGCTTTCCGCTGGCGTCTGGGCGTTGCAATATGCTGGCAGTGGGC
CAGAAAAAACGTTGTCGCCGCTGGTGATGCACAACAATCTGCAAATCGATCTCAATGAGCCGGACCTCTTTCTCGACAGC
GACTCTCTGAGCCAGCTTCCCAAAGATCTCCTCACCATTCCGTTTCTCCACGATGTTCTGAGTGAAGATTTCGTTTTCTA
TTATCAGAATCATGCCGATCGTCTGGGCATTGAAGGCAGCATTCGTCGCATTGTCTATGAACACGATCTCACGCTGAAAG
ATAAACTCTTTTCGTCACTCTTAGATCAGCCTGAGGTAGCCTGA

Upstream 100 bases:

>100_bases
TTTTACTTCTTCATGCCAAAAGGGAGCTATCTCCCTTGTTTGAATTGAAAAGTCCAGGCTGCAAAGTCTGGGCTTTTGTC
GTATTAGGGCACGGTAAAGT

Downstream 100 bases:

>100_bases
GTTTAACGGACACTCCTTCCTGAAATAGAATGGCATCAGAAGGAGCTAATAATGAGCAGAAAAAACCAACGTTACTCTAA
AGAGTTCAAAGCCGAAGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MAVPVKNGWLYTRNVAMSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSPLVMHNNLQIDLNEPDLFLDS
DSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPEVA

Sequences:

>Translated_147_residues
MAVPVKNGWLYTRNVAMSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSPLVMHNNLQIDLNEPDLFLDS
DSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPEVA
>Mature_146_residues
AVPVKNGWLYTRNVAMSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSPLVMHNNLQIDLNEPDLFLDSD
SLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPEVA

Specific function: Unknown

COG id: COG4685

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082069, Length=131, Percent_Identity=96.9465648854962, Blast_Score=262, Evalue=7e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018671 [H]

Pfam domain/function: PF09909 DUF2138 [H]

EC number: NA

Molecular weight: Translated: 16511; Mature: 16380

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVPVKNGWLYTRNVAMSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSP
CCCCCCCCEEEEEEEEECCCCCCCCEEEEEHHHHHHHHHHHCCHHEEEECCCCCCHHCCC
LVMHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGS
EEEECCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH
IRRIVYEHDLTLKDKLFSSLLDQPEVA
HEEEEEECCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AVPVKNGWLYTRNVAMSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSP
CCCCCCCEEEEEEEEECCCCCCCCEEEEEHHHHHHHHHHHCCHHEEEECCCCCCHHCCC
LVMHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGS
EEEECCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH
IRRIVYEHDLTLKDKLFSSLLDQPEVA
HEEEEEECCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 2834621 [H]