| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yfaA [H]
Identifier: 82544526
GI number: 82544526
Start: 2042810
End: 2043253
Strand: Direct
Name: yfaA [H]
Synonym: SBO_2066
Alternate gene names: 82544526
Gene position: 2042810-2043253 (Clockwise)
Preceding gene: 82544525
Following gene: 82544527
Centisome position: 45.2
GC content: 48.65
Gene sequence:
>444_bases TTGGCTGTGCCCGTAAAAAATGGCTGGCTATACACAAGGAATGTGGCAATGAGTGGTGAAAAAAAGGCGAAAGGCTGGCG GTTCTATGGTCTTGTAGGTTTTGGCGCAATAGTACTGCTTTCCGCTGGCGTCTGGGCGTTGCAATATGCTGGCAGTGGGC CAGAAAAAACGTTGTCGCCGCTGGTGATGCACAACAATCTGCAAATCGATCTCAATGAGCCGGACCTCTTTCTCGACAGC GACTCTCTGAGCCAGCTTCCCAAAGATCTCCTCACCATTCCGTTTCTCCACGATGTTCTGAGTGAAGATTTCGTTTTCTA TTATCAGAATCATGCCGATCGTCTGGGCATTGAAGGCAGCATTCGTCGCATTGTCTATGAACACGATCTCACGCTGAAAG ATAAACTCTTTTCGTCACTCTTAGATCAGCCTGAGGTAGCCTGA
Upstream 100 bases:
>100_bases TTTTACTTCTTCATGCCAAAAGGGAGCTATCTCCCTTGTTTGAATTGAAAAGTCCAGGCTGCAAAGTCTGGGCTTTTGTC GTATTAGGGCACGGTAAAGT
Downstream 100 bases:
>100_bases GTTTAACGGACACTCCTTCCTGAAATAGAATGGCATCAGAAGGAGCTAATAATGAGCAGAAAAAACCAACGTTACTCTAA AGAGTTCAAAGCCGAAGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MAVPVKNGWLYTRNVAMSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSPLVMHNNLQIDLNEPDLFLDS DSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPEVA
Sequences:
>Translated_147_residues MAVPVKNGWLYTRNVAMSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSPLVMHNNLQIDLNEPDLFLDS DSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPEVA >Mature_146_residues AVPVKNGWLYTRNVAMSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSPLVMHNNLQIDLNEPDLFLDSD SLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPEVA
Specific function: Unknown
COG id: COG4685
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082069, Length=131, Percent_Identity=96.9465648854962, Blast_Score=262, Evalue=7e-72,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018671 [H]
Pfam domain/function: PF09909 DUF2138 [H]
EC number: NA
Molecular weight: Translated: 16511; Mature: 16380
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVPVKNGWLYTRNVAMSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSP CCCCCCCCEEEEEEEEECCCCCCCCEEEEEHHHHHHHHHHHCCHHEEEECCCCCCHHCCC LVMHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGS EEEECCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH IRRIVYEHDLTLKDKLFSSLLDQPEVA HEEEEEECCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure AVPVKNGWLYTRNVAMSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSP CCCCCCCEEEEEEEEECCCCCCCCEEEEEHHHHHHHHHHHCCHHEEEECCCCCCHHCCC LVMHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGS EEEECCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH IRRIVYEHDLTLKDKLFSSLLDQPEVA HEEEEEECCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 2834621 [H]