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The map label for this gene is rhmA [H]

Identifier: 82544511

GI number: 82544511

Start: 2020973

End: 2021776

Strand: Direct

Name: rhmA [H]

Synonym: SBO_2049

Alternate gene names: 82544511

Gene position: 2020973-2021776 (Clockwise)

Preceding gene: 82544510

Following gene: 82544516

Centisome position: 44.71

GC content: 53.23

Gene sequence:

>804_bases
ATGAACGCATTATTAACCAATCCCTTTAAAGAACGTTTACGCAAGGGCGAAGTGCAAATTGGTCTGTGGTTAAGCTCGAC
TACTTCTTATATGGCAGAAATTGCCGCTACTTCCGGTTATGACTGGTTGCTGATTGACGGGGAGCACGCGCCAAACACCA
TTCAGGATCTTTATCACCAGCTACAGGCGGTAGCGCCCTATGCCAGCCAACCCGTGATCCGTCCGGTGGAAGGCAGTAAA
TCGCTGATTAAACAAGTTCTGGATATTGGCGCGCAAACTCTATTGATCCCGATGGTCGATACTGCCGATCAGGCTCGTCA
GGTGTCGTCTGCCACGCGCTATCCTCCCTACGGTGAGCGTGGTGTTGGGGCCAGTGTGGCACGGGCTGCGCGCTGGGGAC
GCATTGAGAATTACATGGCGCAAGTCAACGATTCGCTTTGTCTGTTAGTGCAGGTGGAAAGTAAAACGGCACTGGATAAC
CTGGACGAGATCCTCGACGTCGAAGGGATTGATGGCGTGTTTATTGGACCAGCGGATCTTTCTGCGTCGTTGGGCTACCC
GGATAACGCCGGGCACCCGGAAGTGCAGCGAATTATTGAAACCAGCATTCGGCGGATCCGTGCTGCGGGTAAAGCGGCTG
GTTTTCTGGCTGTGGCTCCTGATATGGCGCAGCAATGCCTGGCGTGGGGAGCGAACTTTGTCGCTGTTGGCGTTGACACG
ATGCTCTACAGCGATGCCCTGGATCAACGACTGGCGATGTTTAAATCAGGCAAAAATGGGCCACGCATAAAAGGTAGTTA
TTGA

Upstream 100 bases:

>100_bases
CGGTGGCGGTCATCGGTTCGCTGATTATTTTCACTCTGCGTGTAAATCGTACTGTTGCGCAGACCGACGTGGCACATCAT
TAAATAGGTTAAGGAACACG

Downstream 100 bases:

>100_bases
TATCAAAGGCCCATGGGGATCGGCTGTGGGCCTGTGTTAATTAGTGGTTATTCGCTGCCAGATCGGCTTCGCTTAGCTGG
GTGGCCGCGAGCACCTGGTC

Product: aldolase

Products: NA

Alternate protein names: KDR aldolase; 2-dehydro-3-deoxyrhamnonate aldolase [H]

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MNALLTNPFKERLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSK
SLIKQVLDIGAQTLLIPMVDTADQARQVSSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDN
LDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDT
MLYSDALDQRLAMFKSGKNGPRIKGSY

Sequences:

>Translated_267_residues
MNALLTNPFKERLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSK
SLIKQVLDIGAQTLLIPMVDTADQARQVSSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDN
LDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDT
MLYSDALDQRLAMFKSGKNGPRIKGSY
>Mature_267_residues
MNALLTNPFKERLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSK
SLIKQVLDIGAQTLLIPMVDTADQARQVSSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDN
LDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDT
MLYSDALDQRLAMFKSGKNGPRIKGSY

Specific function: Catalyzes the reversible retro-aldol cleavage of 2-keto- 3-deoxy-L-rhamnonate (KDR) to pyruvate and lactaldehyde [H]

COG id: COG3836

COG function: function code G; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HpcH/HpaI aldolase family. KDR aldolase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788578, Length=267, Percent_Identity=98.12734082397, Blast_Score=538, Evalue=1e-154,
Organism=Escherichia coli, GI1789514, Length=254, Percent_Identity=42.9133858267717, Blast_Score=214, Evalue=7e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005000
- InterPro:   IPR015813 [H]

Pfam domain/function: PF03328 HpcH_HpaI [H]

EC number: NA

Molecular weight: Translated: 28910; Mature: 28910

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALLTNPFKERLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQ
CCCCCCCHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
LQAVAPYASQPVIRPVEGSKSLIKQVLDIGAQTLLIPMVDTADQARQVSSATRYPPYGER
HHHHCCCCCCCCEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCC
GVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADL
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCC
SASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCEEEEHHHH
MLYSDALDQRLAMFKSGKNGPRIKGSY
HHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNALLTNPFKERLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQ
CCCCCCCHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
LQAVAPYASQPVIRPVEGSKSLIKQVLDIGAQTLLIPMVDTADQARQVSSATRYPPYGER
HHHHCCCCCCCCEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCC
GVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADL
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCC
SASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCEEEEHHHH
MLYSDALDQRLAMFKSGKNGPRIKGSY
HHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA