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The map label for this gene is ymdA [H]

Identifier: 82544489

GI number: 82544489

Start: 1993651

End: 1993962

Strand: Reverse

Name: ymdA [H]

Synonym: SBO_2022

Alternate gene names: 82544489

Gene position: 1993962-1993651 (Counterclockwise)

Preceding gene: 82544490

Following gene: 82544488

Centisome position: 44.12

GC content: 43.91

Gene sequence:

>312_bases
ATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATCGCAGGAAGCACCGCGCA
AGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGA
ACTGCCCACAGAATGGTTCTGTTCCGGGAAAAACCTATTCCAGCAAAGCGTTAATGAGCGGCAATGTCAAAAACGCGCAA
GTAGCCTCAGTAAAAGTGCAGTATATTGATAAACAGAAAAAGCTGGCTGTAATGAACATCGAATATAACTAA

Upstream 100 bases:

>100_bases
AAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAA
TCATTGAGGAAATAGAATAA

Downstream 100 bases:

>100_bases
GTTTCTGAACAACGCACGTTGCTGAGTAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGG
TGTTAAGGAGGCGTTATGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MFRPFLNSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSVPGKTYSSKALMSGNVKNAQ
VASVKVQYIDKQKKLAVMNIEYN

Sequences:

>Translated_103_residues
MFRPFLNSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSVPGKTYSSKALMSGNVKNAQ
VASVKVQYIDKQKKLAVMNIEYN
>Mature_103_residues
MFRPFLNSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSVPGKTYSSKALMSGNVKNAQ
VASVKVQYIDKQKKLAVMNIEYN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To the N-terminal of the fimA/papA family of fimbria proteins [H]

Homologues:

Organism=Escherichia coli, GI1787281, Length=103, Percent_Identity=96.1165048543689, Blast_Score=208, Evalue=4e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11138; Mature: 11138

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRPFLNSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGS
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHCCCCCCCCCCCCEEEECCCCCC
VPGKTYSSKALMSGNVKNAQVASVKVQYIDKQKKLAVMNIEYN
CCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEEECC
>Mature Secondary Structure
MFRPFLNSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGS
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHCCCCCCCCCCCCEEEECCCCCC
VPGKTYSSKALMSGNVKNAQVASVKVQYIDKQKKLAVMNIEYN
CCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]