| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is ordL [H]
Identifier: 82544243
GI number: 82544243
Start: 1736822
End: 1738054
Strand: Reverse
Name: ordL [H]
Synonym: SBO_1761
Alternate gene names: 82544243
Gene position: 1738054-1736822 (Counterclockwise)
Preceding gene: 82544244
Following gene: 82544242
Centisome position: 38.45
GC content: 58.64
Gene sequence:
>1233_bases GTGCCATTCGACACCCTGAATGAGTCAATCACCTGCGACGTTTGCGTGGTTGGCGGCGGCTATACCGGGCTCTCCTCCGC GCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAATG GCGGGCAGCTTGTGAACTCCTACAACCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCCTATGCTC GGCAGCATGATGTTCGAAGGTGGTGAGATCATCCGCGAACGTATCAAACGTTATCAGATTGACTGCGACTACCGCCCCGG CAGCCTGTTTGTGGCGATGAATGATAAACAGCTCGCCACACTTGAAGAGCAGAAAGAGAACTGGGAACGCTACGGCAATA AACAGCTGGAATTGCTGGACGCCAACGCCATTCGCCGTGAAGTAGCCAGCGATCGCTATACCGGTGCGCTGCTGGATCAC AGCGGTGGGCATATTCACCCACTAAACCTCGCCATTGGCGAAGCGGACGCCATCCGCCTCAACGGCGGGCGCGTGTATGA ACTTTCTGCCGTGACGCAGATCCAGCACACCACGCCAGCCGTTGTGCGCACTGCCAAAGGTCAGGTGACGGCGAAGTATG TGATTGTCGCCGGGAATGCGTATCTGGGCGATAAAGTAGAGCCGGAACTGGCGAAACGCAGCATGCCGTGCGGCACGCAG GTGATCACCACCGAACGGCTGTCGGAAGATTTAGCCCGTTCGCTGATCCCGAAAAACTACTGTGTGGAAGACTGTAATTA TCTGCTTGATTACTACCGTCTTACCGCCGACAACCGTTTGCTGTACGGCGGCGGCGTGGTCTACGGCGCGCGCGACCCGG ATGACGTTGAGCGTCTTGTTGTGCCGAAACTGCTGAAAACCTTCCCGCAGCTGAAGGGCGTCAAAATCGACTATCGCTGG ACGGGCAACTTCCTGCTGACCCTTTCACGGATGCCGCAGTTCGGTCGCCTCGATACCAACATCTATTACATGCAGGGCTA CAGCGGCCACGGCGTCACCTGTACCCACCTCGCCGGGCGTTTGATTGCTGAACTGCTGCGCGGTGACGCCGAGCGTTTCG ATGCCTTCGCCAATCTGCCGCATTACCCGTTCCCCGGCGGGCGCACGCTGCGCGTGCCATTTACCGCGATGGGCGCGGCT TATTACAGCCTGCGCGATCGTCTGGGCGTTTAA
Upstream 100 bases:
>100_bases CCCTGCATGCCCTTGAAAAATTCACCGAACTGAAAACCATCTGGATAAGCCTGGAGGCCTGAAATGACCGAACATACCAG CAGTTATTACGCATAAATAC
Downstream 100 bases:
>100_bases TTTCCGATTAACAGTGAAGAGTCAAAAGGTGTGAAACATGAGCAACAATGAATTCCATCAGCGTCGTCTTTCTGCTACCC CACGCGGGGTTGGCGTGATG
Product: oxidoreductase
Products: NA
Alternate protein names: Gamma-Glu-Put oxidase; Gamma-glutamylputrescine oxidase [H]
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MPFDTLNESITCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASRIGFGASGRNGGQLVNSYNRDIDVIEKSYGMDTAPML GSMMFEGGEIIRERIKRYQIDCDYRPGSLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAIRREVASDRYTGALLDH SGGHIHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVVRTAKGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGTQ VITTERLSEDLARSLIPKNYCVEDCNYLLDYYRLTADNRLLYGGGVVYGARDPDDVERLVVPKLLKTFPQLKGVKIDYRW TGNFLLTLSRMPQFGRLDTNIYYMQGYSGHGVTCTHLAGRLIAELLRGDAERFDAFANLPHYPFPGGRTLRVPFTAMGAA YYSLRDRLGV
Sequences:
>Translated_410_residues MPFDTLNESITCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASRIGFGASGRNGGQLVNSYNRDIDVIEKSYGMDTAPML GSMMFEGGEIIRERIKRYQIDCDYRPGSLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAIRREVASDRYTGALLDH SGGHIHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVVRTAKGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGTQ VITTERLSEDLARSLIPKNYCVEDCNYLLDYYRLTADNRLLYGGGVVYGARDPDDVERLVVPKLLKTFPQLKGVKIDYRW TGNFLLTLSRMPQFGRLDTNIYYMQGYSGHGVTCTHLAGRLIAELLRGDAERFDAFANLPHYPFPGGRTLRVPFTAMGAA YYSLRDRLGV >Mature_409_residues PFDTLNESITCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASRIGFGASGRNGGQLVNSYNRDIDVIEKSYGMDTAPMLG SMMFEGGEIIRERIKRYQIDCDYRPGSLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAIRREVASDRYTGALLDHS GGHIHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVVRTAKGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGTQV ITTERLSEDLARSLIPKNYCVEDCNYLLDYYRLTADNRLLYGGGVVYGARDPDDVERLVVPKLLKTFPQLKGVKIDYRWT GNFLLTLSRMPQFGRLDTNIYYMQGYSGHGVTCTHLAGRLIAELLRGDAERFDAFANLPHYPFPGGRTLRVPFTAMGAAY YSLRDRLGV
Specific function: Involved in the breakdown of putrescine via the oxidation of L-glutamylputrescine [H]
COG id: COG0665
COG function: function code E; Glycine/D-amino acid oxidases (deaminating)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787559, Length=409, Percent_Identity=99.2665036674817, Blast_Score=837, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006076 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 45422; Mature: 45291
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFDTLNESITCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASRIGFGASGRNGGQLVNS CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHH YNRDIDVIEKSYGMDTAPMLGSMMFEGGEIIRERIKRYQIDCDYRPGSLFVAMNDKQLAT CCCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHEEECCCCCCCEEEEEECCCHHHH LEEQKENWERYGNKQLELLDANAIRREVASDRYTGALLDHSGGHIHPLNLAIGEADAIRL HHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEECCCCEEEE NGGRVYELSAVTQIQHTTPAVVRTAKGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGTQ CCCEEEEEEHHHHHCCCCHHHEEECCCCEEEEEEEEECCCCCCCCCCHHHHHCCCCCCCE VITTERLSEDLARSLIPKNYCVEDCNYLLDYYRLTADNRLLYGGGVVYGARDPDDVERLV EEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECEEEECCCCHHHHHHHH VPKLLKTFPQLKGVKIDYRWTGNFLLTLSRMPQFGRLDTNIYYMQGYSGHGVTCTHLAGR HHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEHHHHHHH LIAELLRGDAERFDAFANLPHYPFPGGRTLRVPFTAMGAAYYSLRDRLGV HHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCC >Mature Secondary Structure PFDTLNESITCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASRIGFGASGRNGGQLVNS CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHH YNRDIDVIEKSYGMDTAPMLGSMMFEGGEIIRERIKRYQIDCDYRPGSLFVAMNDKQLAT CCCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHEEECCCCCCCEEEEEECCCHHHH LEEQKENWERYGNKQLELLDANAIRREVASDRYTGALLDHSGGHIHPLNLAIGEADAIRL HHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEECCCCEEEE NGGRVYELSAVTQIQHTTPAVVRTAKGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGTQ CCCEEEEEEHHHHHCCCCHHHEEECCCCEEEEEEEEECCCCCCCCCCHHHHHCCCCCCCE VITTERLSEDLARSLIPKNYCVEDCNYLLDYYRLTADNRLLYGGGVVYGARDPDDVERLV EEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECEEEECCCCHHHHHHHH VPKLLKTFPQLKGVKIDYRWTGNFLLTLSRMPQFGRLDTNIYYMQGYSGHGVTCTHLAGR HHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEHHHHHHH LIAELLRGDAERFDAFANLPHYPFPGGRTLRVPFTAMGAAYYSLRDRLGV HHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 1840553; 7984428 [H]