Click here to switch to the map view.

The map label for this gene is yibJ [H]

Identifier: 82544082

GI number: 82544082

Start: 1583209

End: 1583442

Strand: Reverse

Name: yibJ [H]

Synonym: SBO_1590

Alternate gene names: 82544082

Gene position: 1583442-1583209 (Counterclockwise)

Preceding gene: 82544083

Following gene: 82544078

Centisome position: 35.03

GC content: 54.7

Gene sequence:

>234_bases
GTGACGGCGGCAGCCACAGCCACCATTATCATGATGAAAAACCAGATGGAGCCGGAATACACGCCGCTGCGTAAAATTCA
CCTGTACCACTGCGACCACCGGGGACTGCCGCTGGCGCTGATACGCAGTGACGGCCGAACCGGATGGCGTGTAGAGTATG
ACGAATGGGGCAACCTGCTGAGTGAGGATAACCCGCACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAA

Upstream 100 bases:

>100_bases
GCCGACCGCCTGACGCACCGTACCGTGAATGATGAAGATGCCGAGTGCTGGCAGTACAACGAACGGGGCTAGCTGACGGA
AAAAGACGAGCAGCGCATCC

Downstream 100 bases:

>100_bases
ATAATTCGCATTTTATGTTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCC
GCAGATATTCCCGTGGCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 76

Protein sequence:

>77_residues
MTAAATATIIMMKNQMEPEYTPLRKIHLYHCDHRGLPLALIRSDGRTGWRVEYDEWGNLLSEDNPHRERSSEVHFLY

Sequences:

>Translated_77_residues
MTAAATATIIMMKNQMEPEYTPLRKIHLYHCDHRGLPLALIRSDGRTGWRVEYDEWGNLLSEDNPHRERSSEVHFLY
>Mature_76_residues
TAAATATIIMMKNQMEPEYTPLRKIHLYHCDHRGLPLALIRSDGRTGWRVEYDEWGNLLSEDNPHRERSSEVHFLY

Specific function: Unknown

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI48994942, Length=65, Percent_Identity=67.6923076923077, Blast_Score=102, Evalue=4e-24,
Organism=Escherichia coli, GI1786917, Length=65, Percent_Identity=66.1538461538461, Blast_Score=101, Evalue=9e-24,
Organism=Escherichia coli, GI1790020, Length=65, Percent_Identity=67.6923076923077, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI1786706, Length=64, Percent_Identity=65.625, Blast_Score=97, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385 [H]

Pfam domain/function: PF03527 RHS [H]

EC number: NA

Molecular weight: Translated: 9070; Mature: 8939

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAATATIIMMKNQMEPEYTPLRKIHLYHCDHRGLPLALIRSDGRTGWRVEYDEWGNLL
CCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCEEEHHHHCCCC
SEDNPHRERSSEVHFLY
CCCCCCCCCCCCEEEEC
>Mature Secondary Structure 
TAAATATIIMMKNQMEPEYTPLRKIHLYHCDHRGLPLALIRSDGRTGWRVEYDEWGNLL
CCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCEEEHHHHCCCC
SEDNPHRERSSEVHFLY
CCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8387990; 8041620; 9278503 [H]