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The map label for this gene is ddpC [H]

Identifier: 82544065

GI number: 82544065

Start: 1566998

End: 1567894

Strand: Direct

Name: ddpC [H]

Synonym: SBO_1572

Alternate gene names: 82544065

Gene position: 1566998-1567894 (Clockwise)

Preceding gene: 82544064

Following gene: 82544066

Centisome position: 34.67

GC content: 53.29

Gene sequence:

>897_bases
ATGATGCTAAGCGAGGAAACGTCCGCCGTACGCCCACAAAAACAAACGCGATTTAACGGTGCAAAACTGATATGGATGCT
GAAAGGCAGTCCGCTCACCGTGACCGGCGCAGTCATCATTGTATTAATGCTATTGATGATGTTTTTTTCACCGTGGCTTG
CGACGCATGATCCCAACGCCATTGATTTAACCGCCCGCCTTTTGCCGCCTTCTGCGGCGCACTGGTTTGGCACCGATGAA
GTGGGACGCGATCTGTTCAGCCGCGTACTGGTCGGCAGTCAGCAATCAATTCTCGCCGGATTAGTCGTGGTTGCCATTGC
GGGTATGATTGGTTCGCTACTCGGATGTCTATCCGGTGTGCTTGGCGGACGCGCAGACGCCATCATCATGCGCATCATGG
ACATTATGCTGTCGATTCCTTCGTTGGTACTGACAATGGCACTGGCTGCCGCTCTCGGGCCGAGTTTATTTAACGCCATG
CTGGCGATTGCTATTGTGCGAATTCCCTTTTATGTGCGCCTGGCGCGGGGGCAAGCATTAGTTGTACGCCAGTATACCTA
TGTTCAGGCGGCGAAAACCTTTGGTGCGTCGCGTTGGCATCTGATCAGCTGGCATATTTTACGTAACTCCCTGCCGCCGC
TGATCGTGCAGGCATCGCTGGATATCGGTAGCGCGATTTTAATGGCCGCCACGTTGGGATTTATTGGCCTGGGTGCTCAA
CAACCGAGTGCTGAATGGGGCGCGATGGTAGCGAATGGTCGCAACTATGTACTCGATCAGTGGTGGTATTGCGCATTTCC
AGGGGCAGCGATTTTGCTTACCGCCGTTGGGTTTAATCTCTTTGGTGATGGTATTCGCGATCTGCTTGACCCGAAAGCAG
GAGGAAAGCAGTCATGA

Upstream 100 bases:

>100_bases
GCTTTGCCGTCGTGGTTTCATTTGCTTATGTGCTGGTCAACCTGGTGGTGGATTTGCTCTATTTGTGGATTGATCCGCGT
ATCGGACGTGGAGGTGGTGA

Downstream 100 bases:

>100_bases
CCCAGCCCGTTCTGGACATTCAACAGCTGCATTTGAGTTTCCCCGGTTTTAACGGTGATGTTCACGCGCTCAACAATGTG
TCCTTGCAGATTAACCGCGG

Product: ATP-dependent peptide transporter membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MMLSEETSAVRPQKQTRFNGAKLIWMLKGSPLTVTGAVIIVLMLLMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDE
VGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAM
LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQ
QPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS

Sequences:

>Translated_298_residues
MMLSEETSAVRPQKQTRFNGAKLIWMLKGSPLTVTGAVIIVLMLLMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDE
VGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAM
LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQ
QPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS
>Mature_298_residues
MMLSEETSAVRPQKQTRFNGAKLIWMLKGSPLTVTGAVIIVLMLLMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDE
VGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAM
LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQ
QPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=298, Percent_Identity=98.6577181208054, Blast_Score=587, Evalue=1e-169,
Organism=Escherichia coli, GI1787054, Length=287, Percent_Identity=40.418118466899, Blast_Score=214, Evalue=5e-57,
Organism=Escherichia coli, GI1789964, Length=255, Percent_Identity=46.2745098039216, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=37.037037037037, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1787498, Length=261, Percent_Identity=34.4827586206897, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787549, Length=248, Percent_Identity=34.6774193548387, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=29.3333333333333, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31962; Mature: 31962

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLSEETSAVRPQKQTRFNGAKLIWMLKGSPLTVTGAVIIVLMLLMMFFSPWLATHDPNA
CCCCCCCHHCCCCHHHCCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHCHHHCCCCCCC
IDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGV
EEEEEEECCCCCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQAL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEEECCCEE
VVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQ
EEEHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
QPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS
CCCCCHHHEEECCCCEEHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MMLSEETSAVRPQKQTRFNGAKLIWMLKGSPLTVTGAVIIVLMLLMMFFSPWLATHDPNA
CCCCCCCHHCCCCHHHCCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHCHHHCCCCCCC
IDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGV
EEEEEEECCCCCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQAL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEEECCCEE
VVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQ
EEEHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
QPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGKQS
CCCCCHHHEEECCCCEEHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]