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The map label for this gene is ydeM [H]

Identifier: 82544053

GI number: 82544053

Start: 1546090

End: 1547262

Strand: Direct

Name: ydeM [H]

Synonym: SBO_1559

Alternate gene names: 82544053

Gene position: 1546090-1547262 (Clockwise)

Preceding gene: 82544052

Following gene: 82544054

Centisome position: 34.21

GC content: 38.53

Gene sequence:

>1173_bases
TTGAGCGAGATAGCGATGCACGTTACAGCCAAGCCCTCCAGTTTTCAATGTAATCTCAAATGTGATTACTGTTTTTACCT
TGAAAAAGAGTCGCAGTTTACTCATGAAAAATGGATGGATGACAGCACTCTGAAAGAGTTCATCAAACAATATATCGCAG
CGTCTGGCAATCAGGTCTATTTTACCTGGCAAGGCGGTGAACCCACTCTGGCTGGCCTGGATTTTTTCCGTAAAGTTATT
CACTATCAACAACGCTATGCAGGCCAAAAACGTATTTTTAATGCATTACAAACGAATGGCATTTTATTGAATAATGAATG
GTGTTCCTTTCTCAAAGAACATGAATTTCTGGTTGGTATCTCGATCGATGGCCCCCAGGAGTTACATGACCGTTACAGAC
GCAGTAATTCAGGTAACGGTACTTTTGCAAAAGTGATAGCAGCCATCGAGCGTCTGAAATCATATCAAGTTGAGTTTAAT
ACGTTAACCGTCATTAATAACGTTAATGTCCATTACCCTCTTGAGGTTTATCATTTTTTAAAATCTATCGGCAGTAAACA
TATGCAATTTATCGAATTGCTCGAAACCGGGACGCCGAATATTGATTTCAGTGGTCATAGTGAGAACACATTCCGTATCA
TTGATTTTTCTGTGTCTCCCACGGCTTATGGCAAGTTTATGTCAACCATTTTTATGCAATGGGTTAAAAACGATGTGGGT
GAAATTTTCATTCGTCAGTTTGAAAGCTTTGTCAGCCGTTTTTTGGGGAATGGGCATACAAGTTGTATTTTCCAGGAGTC
CTGCAAGGATAATCTGGTTGTTGAAAGTAATGGAGACATTTACGAATGCGACCATTTTGTCTATCCACAGTACAAAATTG
GAAACATTAATAAATCTGAACTCAAAACGATGAACAGTGTACAACTGACAGCGCAAAAAAAACGGATTTCAGCGAAATGT
CAGCAATGTGCATATAAACCTATCTGCAATGGCGGTTGTCCTAAGCATCGTATTACTAAAGTAAACAATGAGACTGTTTC
TTATTTTTGCGAAGGTTATAAAATCCTTTTTTCAACCATGGTACCTTATATGAACGCCATGGTTGAGTTAGCTAAGAACA
GAGTACCGCTTTACCACATTATGGATGTTGCAAAACAAATGGAGAATAATTAA

Upstream 100 bases:

>100_bases
GCTTAGCGAGGTAAATCAGGAGAAGTTTAACAATATCAAGAAAGCACTAAGCGAAGCGAAATAACTAAACCTTCATGCGG
CGGAATTTTCCGCCGCCTTA

Downstream 100 bases:

>100_bases
TAACGCTCTCTTTTAACTCCATTCTTAGCCTCCTTCTTATGACCTTAACAAGGCACCCGACATAAATTCCTGTCGGGTGT
TTCGTCATCATCATCTTCCC

Product: enzyme

Products: NA

Alternate protein names: AnSME homolog [H]

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSEIAMHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVI
HYQQRYAGQKRIFNALQTNGILLNNEWCSFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFN
TLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVSPTAYGKFMSTIFMQWVKNDVG
EIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRISAKC
QQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN

Sequences:

>Translated_390_residues
MSEIAMHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVI
HYQQRYAGQKRIFNALQTNGILLNNEWCSFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFN
TLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVSPTAYGKFMSTIFMQWVKNDVG
EIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRISAKC
QQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
>Mature_389_residues
SEIAMHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVIH
YQQRYAGQKRIFNALQTNGILLNNEWCSFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNT
LTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVSPTAYGKFMSTIFMQWVKNDVGE
IFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRISAKCQ
QCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=385, Percent_Identity=99.2207792207792, Blast_Score=805, Evalue=0.0,
Organism=Escherichia coli, GI48994973, Length=394, Percent_Identity=40.8629441624365, Blast_Score=333, Evalue=1e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 45046; Mature: 44915

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIAMHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVY
CCCEEEEEEECCCCEEEEEEEEEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHCCCCEEE
FTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCSFLKEHEFLVGI
EEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCEEEEHHHHHHHHCCCEEEEE
SIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFL
ECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEEEEEEECCCEECHHHHHHHH
KSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVSPTAYGKFMSTIFMQWVKNDVG
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
EIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSE
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCCEEECCCEECCCEEECCCCHHH
LKTMNSVQLTAQKKRISAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH
VPYMNAMVELAKNRVPLYHIMDVAKQMENN
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEIAMHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVY
CCEEEEEEECCCCEEEEEEEEEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHCCCCEEE
FTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCSFLKEHEFLVGI
EEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCEEEEHHHHHHHHCCCEEEEE
SIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFL
ECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEEEEEEECCCEECHHHHHHHH
KSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVSPTAYGKFMSTIFMQWVKNDVG
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
EIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSE
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCCEEECCCEECCCEEECCCCHHH
LKTMNSVQLTAQKKRISAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH
VPYMNAMVELAKNRVPLYHIMDVAKQMENN
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]