Click here to switch to the map view.

The map label for this gene is ydgC [H]

Identifier: 82544026

GI number: 82544026

Start: 1510211

End: 1510507

Strand: Direct

Name: ydgC [H]

Synonym: SBO_1529

Alternate gene names: 82544026

Gene position: 1510211-1510507 (Clockwise)

Preceding gene: 82544022

Following gene: 82544030

Centisome position: 33.41

GC content: 45.45

Gene sequence:

>297_bases
GTGCTGTTGATTGGTGTTTTAGCAAAAACGAAAAATTATTATATCGCCGGGCTGATTCCACTTTTCCCGACCTTTGCGCT
TATCGCGCATTATATTGTTGCCAGCGAACGCGGCATTGAAGCCTTACGCGCAACCATCATTTTTAGTATGTGGTCGATTA
TTCCCTATTTTGTTTACCTGGTGTCGCTGTGGTATTTCACCGGAATGATGCGCTTGCCCGCCGCTTTTGTTGGTTCTGTT
GCGTGTTGGGGGATAAGCGCATGGGTGTTGATTATATGCTGGATAAAGCTGCATTAA

Upstream 100 bases:

>100_bases
ACTATCAATCGTTTCTAAACAAGTTTTCATCAGGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAATCAAAG
CCGCGCTCGGTGCGCTGGTA

Downstream 100 bases:

>100_bases
CGCAGATGACGACCGCCATCAAGTGGGAAACTGCGTCCGGTGACAAAGCAACTGGTAAGTAAGTAATCGACCAGGTCGAT
CACTTCTTTCTCGCCAGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSV
ACWGISAWVLIICWIKLH

Sequences:

>Translated_98_residues
MLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSV
ACWGISAWVLIICWIKLH
>Mature_98_residues
MLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSV
ACWGISAWVLIICWIKLH

Specific function: Unknown

COG id: COG3136

COG function: function code R; Uncharacterized membrane protein required for alginate biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To P.aeruginosa glpM [H]

Homologues:

Organism=Escherichia coli, GI1787892, Length=98, Percent_Identity=98.9795918367347, Blast_Score=193, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009707
- ProDom:   PD028709 [H]

Pfam domain/function: PF06942 GlpM [H]

EC number: NA

Molecular weight: Translated: 11118; Mature: 11118

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWSIIPYFVYL
CEEEEEEHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWSIIPYFVYL
CEEEEEEHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]