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The map label for this gene is rnfC [H]

Identifier: 82544003

GI number: 82544003

Start: 1481672

End: 1483894

Strand: Reverse

Name: rnfC [H]

Synonym: SBO_1505

Alternate gene names: 82544003

Gene position: 1483894-1481672 (Counterclockwise)

Preceding gene: 82544004

Following gene: 82544002

Centisome position: 32.83

GC content: 55.02

Gene sequence:

>2223_bases
ATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAAC
CCAGTCCAACGGTACCCCCCTGCGCCAGGTACCACTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTG
AAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGCCAGCCGCTTACCCGTGGTCGCGGCAAAATGCTGCCT
GTTCACGCGCCCACCTCGGGTACCGTTACGGCTATTGCGCCCCACTCTACGGCTCATCCTTCAGCTTTAGCTGAATTAAG
CGTGATTATTGATGCCGATGGTGAAGACTGCTGGATCCCGCGCGACGGCTGGGCCGATTATCGCACTCGTAGTCGCGAAG
AGTTAATCGAGCGCATACATCAGTTTGGTGTTGCCGGGCTGGGCGGTGCAGGATTCCCGACAGGCGTTAAATTGCAGGGT
GGCGGAGATAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCA
GGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTG
AAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCA
ACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATC
CGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCG
AGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCAT
TTATTGAATGATGCCCGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCC
ATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGAACTTGGCGAACCACAGGAAG
AACAAAGCTGCATCCGGTGTAGCGCCTGTGCTGACGCCTGCCCTGCGGATCTTTTGCCGCAACAGTTGTACTGGTTCAGC
AAAGGTCAGCAACACGATAAAGCTACCACGCATAACATTGCTGATTGCATTGAATGTGGGGCTTGCGCGTGGGTTTGCCC
GAGCAATATTCCCCTGGTGCAATATTTCCGTCAGGAAAAAGCTGAAATTGCGGCTATTCGTCAGGAAGAAAAGCGCGCCG
CAGAAGCCAAAGCGCGTTTCGAAGCGCGCCAGGCTCGTCTGGAGCGCGAAAAAGCGGCTCGCCTTGAACGACATAAGAGC
GCAGCCGTTCAACCTGCAGCCAAAGATAAAGATGCGATTGCTGCCGCTCTGGCGCGGGTGAAAGAGAAACAGGCCCAGGC
TACACAGCCTATTGTGATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGC
AAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAA
GCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCG
CAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAG
AACAGGTTGATCCGCGCAAAGCCGCCATCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACTGGAACAGCAACAGGCT
AATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCT
GGAACAGCAACAGGCTAATGCGGTACCTGAAGAACAGGTTGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTG
CCAAAGCGCGCAAGCTGGAACAGCAACAGACTAACGCAGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCC
GCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAAAAGGTTGTAAACGAGGACTAA

Upstream 100 bases:

>100_bases
CCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCG
TATCATTCCCGTGGAACACC

Downstream 100 bases:

>100_bases
ATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATCGCGCATTATGCTGTTGGTGTTGCTCGC
AGCCGTGCCAGGAATCGCAG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 740; Mature: 740

Protein sequence:

>740_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDARFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVE
AAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAIEAAIARAKARKLEQQQA
NAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVEAAIARAKARKLEQQQTNAEPEEQVDPRKAAVA
AAIARAQAKKAAQQKVVNED

Sequences:

>Translated_740_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDARFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVE
AAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAIEAAIARAKARKLEQQQA
NAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVEAAIARAKARKLEQQQTNAEPEEQVDPRKAAVA
AAIARAQAKKAAQQKVVNED
>Mature_740_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDARFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVE
AAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAIEAAIARAKARKLEQQQA
NAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVEAAIARAKARKLEQQQTNAEPEEQVDPRKAAVA
AAIARAQAKKAAQQKVVNED

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=740, Percent_Identity=98.7837837837838, Blast_Score=1467, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 80305; Mature: 80305

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVS
CCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEHH
VGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIP
HCCHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCEECC
RDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT
CCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHCC
GEAIARPGNVWARLGTPVRHLLNDARFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECG
CCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHH
ELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKA
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
RKLEQQQANAEPEEQVDPRKAAIEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIA
HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHH
RAKARKLEQQQANAVPEEQVDPRKAAVEAAIARAKARKLEQQQTNAEPEEQVDPRKAAVA
HHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHH
AAIARAQAKKAAQQKVVNED
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVS
CCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEHH
VGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIP
HCCHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCEECC
RDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT
CCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSNDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHCC
GEAIARPGNVWARLGTPVRHLLNDARFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECG
CCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHH
ELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKA
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
RKLEQQQANAEPEEQVDPRKAAIEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIA
HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHH
RAKARKLEQQQANAVPEEQVDPRKAAVEAAIARAKARKLEQQQTNAEPEEQVDPRKAAVA
HHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHH
AAIARAQAKKAAQQKVVNED
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA