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The map label for this gene is ydhP [H]

Identifier: 82543973

GI number: 82543973

Start: 1451702

End: 1452877

Strand: Direct

Name: ydhP [H]

Synonym: SBO_1474

Alternate gene names: 82543973

Gene position: 1451702-1452877 (Clockwise)

Preceding gene: 82543971

Following gene: 82543977

Centisome position: 32.12

GC content: 53.57

Gene sequence:

>1176_bases
ATGAAAATTAACTATCCGTTGCTGGCGCTGGCGCTGGCGATTGGCGCGTTTGGTATCGGGACAACGGAGTTCTCGCCAAT
GGGCTTGTTGCCCGTCATTGCGCGCGGTGTGGATGTCTCGATTCCCGCTGCCGGAATGTTAATCAGTGCCTATGCAGTTG
GCGTAATGGTTGGCGCGCCGCTGATGACGCTTCTACTTTCTCATCGTGCCCGCCGCAGTGCGTTGATTTTCCTGATGGCA
ATTTTCACGCTCGGCAACGTACTTTCCGCCATCGCGCCGGATTATATGACCCTGATGCTTTCACGCATTTTGACCAGCCT
GAATCACGGAGCATTTTTTGGTTTGGGTTCAGTCGTGGCCGCAAGCGTGGAGCCAAAACATAAACAGGCCAGCGCAGTTG
CCACTATGTTTATGGGGTTAACCCTGGCAAATATCGGTGGCGTGCCGGCGGCGACCTGGTTGGGTGAAACCATCGGCTGG
CGGATGTCATTTCTGGCAACGGCGGGGCTGGGAGTGATTTCAATGGTAAGTCTGTTCTTCTCATTACCTAAAGGTGGTGC
AGGGGCACGACCTGAAGTGAAAAAAGAGCTGGCGGTATTAATGCGTCCGCAGGTGTTGTCTGCATTGCTGACGACGGTAC
TGGGAGCTGGTGCAATGTTTACTCTCTACACCTATATCTCTCCGGTACTGCAAAGTATTACCCACGCAACACCGGTGTTC
GTCACGGCAATGCTGGTGCTGATTGGTGTCGGATTCTCTATCGGTAACTATCCCGGCGGCAAACTGGCAGATCGTTCAGT
TAACGGCACGTTGAAAGGCTTTTTGTTGTTGTTGATGGTGATTATGCTGGCAATCCCGTTCCTGGCCCGCAATGAGTTCG
GCGCAGCTATTAGCATGGTGGTGTGGGGCGCAGCAGCCTTTGCGGTCGTACCGCCGTTACAGATGCGCGTGATGCGTGTC
GCCAGTGAAGCGCCAGGTCTGTCTTCATCAGTCAATATTGGTGCCTTTAATCTTGGAAATGCGCTGGGAGCAGCTGCTGG
TGGTGCGGTAATTTCCGCTGGGCTGGGATACAGCTTTGTGCCGGTGATGGGAGCGATTGTCGCGGGACTGGCATTATTGC
TGGTGTTTATGTCAGCCAGAAAACAACCTGAAACAGTTTGCGTTGCTAACAGCTAA

Upstream 100 bases:

>100_bases
TGTTTTCTCTTTTTGTTATTTTCATTTTTTTGTGATTGCTGTCATGCTTTCGCCACTTTAATGAATATCGCGTAATGACG
CGAAGAGGTGGAGATAAGGC

Downstream 100 bases:

>100_bases
TTAAACAAAAACGCAGAAGGATAACCTTCTGCGTTACAGTTGCTGACAACGTGCGATTTATCTTGCCGAATGCGCTGTTA
ACGCCTCATCCGCGTTGGCA

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MKINYPLLALALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMA
IFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVEPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGW
RMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVF
VTAMLVLIGVGFSIGNYPGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAAAFAVVPPLQMRVMRV
ASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS

Sequences:

>Translated_391_residues
MKINYPLLALALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMA
IFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVEPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGW
RMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVF
VTAMLVLIGVGFSIGNYPGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAAAFAVVPPLQMRVMRV
ASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>Mature_391_residues
MKINYPLLALALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMA
IFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVEPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGW
RMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVF
VTAMLVLIGVGFSIGNYPGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAAAFAVVPPLQMRVMRV
ASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=391, Percent_Identity=98.7212276214834, Blast_Score=711, Evalue=0.0,
Organism=Escherichia coli, GI1786595, Length=378, Percent_Identity=32.010582010582, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1787808, Length=382, Percent_Identity=30.3664921465969, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI145693198, Length=327, Percent_Identity=25.6880733944954, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40233; Mature: 40233

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]