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The map label for this gene is ydhY [H]

Identifier: 82543958

GI number: 82543958

Start: 1434596

End: 1435273

Strand: Direct

Name: ydhY [H]

Synonym: SBO_1458

Alternate gene names: 82543958

Gene position: 1434596-1435273 (Clockwise)

Preceding gene: 82543957

Following gene: 82543959

Centisome position: 31.74

GC content: 47.94

Gene sequence:

>678_bases
ATGAACCCGGTTGATCGTCCACTATTAGATATTGGCTTAACGCGATTAGAATTCTTGCGTATATCAGGAAAAGGCCTTGC
TGGTCTAACAATTGCCCCTGCGTTACTGTCACTTTTGGGTTGCAAACAGGAAGATATTGATAGCGGCACAGTAGGGTTGA
TAAATACACCCAAAGGGGTGCTGGTGACCCAGCGAGCGCGATGCACGGGTTGCCACCGCTGTGAAATCTCTTGTACCAAC
TTCAACGATGGCTCAGTAGGGACATTCTTCTCCCGTATCAAAATCCATCGCAATTATTTCTTTGGCGACAACGGGGTTGG
CTCTGGCGGCGGCCTGTATGGCGATCTCAACTATACCGCGGACACCTGCCGTCAATGCAAAGAGCCGCAATGCATGAACG
TCTGCCCGATTGGTGCGATTACCTGGCAGCAGAAAGAAGGCTGTATTACCGTCGATCATAAACGCTGTATTGGCTGTAGC
GCCTGTACTACGGCATGCCCGTGGATGATGGCCACCGTAAATACCGAAAGTAAAAAATCCTCGAAATGTGTGTTATGCGG
TGAATGTGCAAACGCCTGCCCAACAGGGGCGTTAAAAATTATCGAGTGGAAAGATATTACTGTGAGAATCTTGCAAAGGA
AAAAATCATGGCTAACGGTTGGACAGGTAATATATTAA

Upstream 100 bases:

>100_bases
TATCTGGTGTTGGGGACAGAGTCAGCAGCGTATTAATTGAATGCTTAATATCAGGCTGCTGAATTGTCAGCACTGTGTTT
GCGAAGAGGATGCGAAATAA

Downstream 100 bases:

>100_bases
GAGTCAATCTCACGACAGGAAATATTACCCTCGAAGATTCCAGTAAGTTTAAAAGTTTTGTCGGTGGCATGGGCTTCGGC
TACAAAATTATGTATGACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITVRILQRKKSWLTVGQVIY

Sequences:

>Translated_225_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITVRILQRKKSWLTVGQVIY
>Mature_225_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITVRILQRKKSWLTVGQVIY

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787963, Length=208, Percent_Identity=100, Blast_Score=427, Evalue=1e-121,
Organism=Escherichia coli, GI1787872, Length=150, Percent_Identity=32, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI226510944, Length=152, Percent_Identity=30.2631578947368, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787122, Length=150, Percent_Identity=30.6666666666667, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082179, Length=171, Percent_Identity=26.9005847953216, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI2367245, Length=169, Percent_Identity=29.585798816568, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI87082180, Length=169, Percent_Identity=28.4023668639053, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367345, Length=171, Percent_Identity=28.0701754385965, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1789067, Length=187, Percent_Identity=27.807486631016, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787749, Length=168, Percent_Identity=24.4047619047619, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790326, Length=182, Percent_Identity=24.1758241758242, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787478, Length=167, Percent_Identity=25.748502994012, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 24438; Mature: 24438

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
9.8 %Cys+Met (Translated Protein)
8.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV
CCCCCCHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCE
LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTA
EEECCCCCCCCEEEEEEECCCCCCCHHHHHHEEEEEEEEEECCCCCCCCCCEEEECCCCH
DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS
HHHHHCCCCCCCCCCCCCEEEEECCCCCEEECCCHHCCCHHHHHHCCEEEEEECCCCCCC
SKCVLCGECANACPTGALKIIEWKDITVRILQRKKSWLTVGQVIY
CCEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCEECC
>Mature Secondary Structure
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV
CCCCCCHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCE
LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTA
EEECCCCCCCCEEEEEEECCCCCCCHHHHHHEEEEEEEEEECCCCCCCCCCEEEECCCCH
DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS
HHHHHCCCCCCCCCCCCCEEEEECCCCCEEECCCHHCCCHHHHHHCCEEEEEECCCCCCC
SKCVLCGECANACPTGALKIIEWKDITVRILQRKKSWLTVGQVIY
CCEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]