Definition Shigella boydii Sb227, complete genome.
Accession NC_007613
Length 4,519,823

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The map label for this gene is ydiL [H]

Identifier: 82543941

GI number: 82543941

Start: 1417301

End: 1417624

Strand: Reverse

Name: ydiL [H]

Synonym: SBO_1441

Alternate gene names: 82543941

Gene position: 1417624-1417301 (Counterclockwise)

Preceding gene: 82543942

Following gene: 82543940

Centisome position: 31.36

GC content: 47.53

Gene sequence:

>324_bases
ATGCGCACCTGGATTGCCCAGACCGGTGACAGTGAAAGCTGGCGTCAGTGGGAAAATGGCAAGTGTGCCATTCCTGATCG
TGTAGTCGAGCAACTGTTGGCTATGCGTCAGCAAAGAAAAAAACATCTTCATGCCATCATAGAGAAAATAAATAACCGCA
TCGGCAACAACACCATGCGTTTTTTCCCCGACTTAACCGCATTTCAACGAGTCTACCCTGATGGCAATTTTATTGACTGG
AAGATCTATCAATCGGTAGCCGCTGAAGGTAATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAG
CTAA

Upstream 100 bases:

>100_bases
ATGTTATTTATATTTTATTGTTTATTTCATGCAGCCATTACACGATGAACGCTTATGAACTCCAGGCACTCCGACATATT
TTTGCCATGACTATTGATGA

Downstream 100 bases:

>100_bases
TGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTGTTTCATCGGTACTGTTCGGTGTAGCCGCATTCT
CGACCTTTTATGTGATTGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MRTWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDW
KIYQSVAAEGNAVEKQIPQPVGGRQRS

Sequences:

>Translated_107_residues
MRTWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDW
KIYQSVAAEGNAVEKQIPQPVGGRQRS
>Mature_107_residues
MRTWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDW
KIYQSVAAEGNAVEKQIPQPVGGRQRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081956, Length=90, Percent_Identity=97.7777777777778, Blast_Score=187, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015060
- InterPro:   IPR010982 [H]

Pfam domain/function: PF08965 DUF1870 [H]

EC number: NA

Molecular weight: Translated: 12482; Mature: 12482

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMR
CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FFPDLTAFQRVYPDGNFIDWKIYQSVAAEGNAVEKQIPQPVGGRQRS
HCCCHHHHHHHCCCCCEEHHHHHHHHHCCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRTWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMR
CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FFPDLTAFQRVYPDGNFIDWKIYQSVAAEGNAVEKQIPQPVGGRQRS
HCCCHHHHHHHCCCCCEEHHHHHHHHHCCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]