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The map label for this gene is gdhA [H]

Identifier: 82543836

GI number: 82543836

Start: 1312333

End: 1313676

Strand: Reverse

Name: gdhA [H]

Synonym: SBO_1328

Alternate gene names: 82543836

Gene position: 1313676-1312333 (Counterclockwise)

Preceding gene: 82543838

Following gene: 82543834

Centisome position: 29.06

GC content: 53.5

Gene sequence:

>1344_bases
ATGGATCAGACATATTCTCTGGAGTCATTCCTCAACCATGTCCAAAAGCGCGACCCGAATCAAACCGAGTTCGCGCAAGC
CGTTCGTGAAGTAATGACCACACTCTGGCCTTTTCTTGAACAAAATCCAAAATATCGCCAGATGTCATTACTGGAGCGTC
TGGTTGAACCGGAGCGCGTGATCCAGTTTCGCGTGGTATGGGTTGATGATCGCAACCAGGTACAGGTCAACCGTGCATGG
CGTGTGCAGTTCAGCTCAGCCATCGGCCCGTACAAAGGCGGTATGCGCTTCCATCCGTCAGTTAACCTCTCCATTCTCAA
ATTCCTCGGCTTCGAACAAACCTTCAAAAATGCCCTGACTACCCTGCCGATGGGCGGTGGTAAAGGCGGTAGCGATTTTG
ACCCGAAAGGTAAAAGCGAAAGCGAAGTGATGCGTTTCTGCCAGGCGCTGATGACCGAGCTTTATCGTCATCTGGGCGCG
GATACTGACGTTCCGGCAGGTGATATCGGCGTTGGTGGTCGTGAAGTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTC
CAACAATACCGCCTGCGTCTTCACCGGTAAGGGCCTTTCATTTGGCGGTAGTCTTATTCGCCCGGAAGCTACCGGCTACG
GTCTGGTTTATTTCACAGAAGCAATGTTAAAACGCCACGGTATGGGTTTTGAAGGGATGCGCGTTTCCGTTTCTGGCTCC
GGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCAC
TGTAGTTGATGAAAGCGGATTCACGAAAGAGAAACTGGCACGTCTTATCGAAATCAAAGCCAGCCGCGATGGTCGAGTGG
CAGATTACGCCAAAGAATTTGGTCTGGTCTATCTCGAAGGCCAACAGCCGTGGTCTGTACCGGTTGATATCGCCCTGCCT
TGCGCCACCCAGAACGAACTGGATGTTGGCGCCGCGCATCAGCTTATCGCCAATGGCGTTAAAGCCGTCGCCGAAGGGGC
AAATATGCCGACCACCATCGAAGCGACTGAACTGTTCCAGCAGGCAGGCGTACTGTTTGCACCGGGTAAAGCGGCTAATG
CTGGCGGTGTAGCAACGTCAGGCCTTGAAATGGCGCAAAACGCTGCGCGCCTGGGCTGGAAAGCCGAGAAAGTTGACGCA
CGTTTGCATCACATCATGCTGGATATCCACCATGCCTGTGTTGAGCATGGTGGTGAAGGTGAGCAAACCAACTACGTGCA
GGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAA

Upstream 100 bases:

>100_bases
GCTTACCGTCACATTCTTGATGGTATAGTCGAAAACTGCAAAAGCACATGACATAAACAACATAAGCACAATCGTATTAA
TATATAAGGGTTTTATATCT

Downstream 100 bases:

>100_bases
GTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCC
GGGCAAGCGCAGCGCCCCCG

Product: glutamate dehydrogenase

Products: NA

Alternate protein names: NADP-GDH [H]

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAW
RVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSESEVMRFCQALMTELYRHLGA
DTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS
GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSVPVDIALP
CATQNELDVGAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDA
RLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI

Sequences:

>Translated_447_residues
MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAW
RVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSESEVMRFCQALMTELYRHLGA
DTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS
GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSVPVDIALP
CATQNELDVGAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDA
RLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI
>Mature_447_residues
MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAW
RVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSESEVMRFCQALMTELYRHLGA
DTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS
GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSVPVDIALP
CATQNELDVGAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDA
RLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI

Specific function: Unknown

COG id: COG0334

COG function: function code E; Glutamate dehydrogenase/leucine dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Glu/Leu/Phe/Val dehydrogenases family [H]

Homologues:

Organism=Homo sapiens, GI31377775, Length=406, Percent_Identity=30.2955665024631, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI4885281, Length=390, Percent_Identity=29.7435897435897, Blast_Score=131, Evalue=1e-30,
Organism=Escherichia coli, GI1788059, Length=447, Percent_Identity=99.1051454138702, Blast_Score=919, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17544676, Length=345, Percent_Identity=29.2753623188406, Blast_Score=113, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6324951, Length=452, Percent_Identity=50.8849557522124, Blast_Score=421, Evalue=1e-118,
Organism=Saccharomyces cerevisiae, GI6319256, Length=454, Percent_Identity=51.7621145374449, Blast_Score=416, Evalue=1e-117,
Organism=Drosophila melanogaster, GI24649283, Length=319, Percent_Identity=31.974921630094, Blast_Score=129, Evalue=5e-30,
Organism=Drosophila melanogaster, GI45553475, Length=382, Percent_Identity=29.0575916230367, Blast_Score=121, Evalue=9e-28,
Organism=Drosophila melanogaster, GI45549226, Length=382, Percent_Identity=29.0575916230367, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24649460, Length=306, Percent_Identity=30.3921568627451, Blast_Score=100, Evalue=1e-21,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 9362 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006095
- InterPro:   IPR006096
- InterPro:   IPR006097
- InterPro:   IPR014362
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00208 ELFV_dehydrog; PF02812 ELFV_dehydrog_N [H]

EC number: =1.4.1.4 [H]

Molecular weight: Translated: 48526; Mature: 48526

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00074 GLFV_DEHYDROGENASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCE
IQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT
EEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCEEECCCCCHHHHHHHCHHHHHHHHHH
TLPMGGGKGGSDFDPKGKSESEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS
HHHHHHCCCCEEEEECCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCC
GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF
CCHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHC
GLVYLEGQQPWSVPVDIALPCATQNELDVGAAHQLIANGVKAVAEGANMPTTIEATELFQ
CEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG
HCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
EQTNYVQGANIAGFVKVADAMLAQGVI
CCCCEECCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERV
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCE
IQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT
EEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCEEECCCCCHHHHHHHCHHHHHHHHHH
TLPMGGGKGGSDFDPKGKSESEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
GMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGS
HHHHHHCCCCEEEEECCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCC
GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEF
CCHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHC
GLVYLEGQQPWSVPVDIALPCATQNELDVGAAHQLIANGVKAVAEGANMPTTIEATELFQ
CEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEG
HCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
EQTNYVQGANIAGFVKVADAMLAQGVI
CCCCEECCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 6308576; 6373501; 9097039; 9278503; 9298646 [H]