Click here to switch to the map view.

The map label for this gene is yeaM [H]

Identifier: 82543812

GI number: 82543812

Start: 1288115

End: 1288936

Strand: Direct

Name: yeaM [H]

Synonym: SBO_1303

Alternate gene names: 82543812

Gene position: 1288115-1288936 (Clockwise)

Preceding gene: 82543809

Following gene: 82543814

Centisome position: 28.5

GC content: 50.12

Gene sequence:

>822_bases
ATGATGCACAGGTTGAATCTCAATGGCTATGAACCCGACCGACACCATGAAGCCGCGGTCGCATTTTGTATTCACGCCGG
AACGGATGAGTTAACCAGTCCTGTACATCAGCACCGCAAAGGACAGCTGATACTAGCATTACATGGTGCAATTACCTGTA
CGGTGGAAAATGCTTTGTGGATGGTGCCGCCGCAATATGCGGTTTGGATACCGGGCGGGGTGGAACATAGCAATCAAGTG
ACAGCTAACGCTGAACTCTGTTTTCTGTTTATCGAACCCAGCGCAGTGACAATGCCGACAACATGTTGCACATTGAAAAT
ATCGCCCTTATGCCGGGAATTGATTTTAACCCTGGCAAACAGGACGACGACTCAGCGTGCTGAGCCGATGACCCGCAGAT
TAATACAGGTCCTGTTTGATGAACTCCCTCAGCAGCCACAACAACAGCTGCACCTGCCCGTTTCTTCTCATCCTAAAATC
CGCACGATGGTGGAGATGATGGCGAAAGGGCCCGTCGAGTGGGGGTCATTAGGGCAATGGGCTGGCTTTTTTGCGATGAG
TGAACGCAATCTTGCGCGACTGATCGTAAAAGAGACGGGGTTGAGTTTTCGCCAGTGGCGTCAGCAGTTACAGCTGATTA
TGGCACTTCAGGGATTAGTGAAAGGCGATACTGTACAGAAAGTTGCTCATACGCTGGGGTATGATTCAACAACGGCCTTT
ATTACTATGTTTAAGAAAGGCCTGGGGCAAACGCCAGGCCGATATATTGCGGGATTAACTACTGTTTCCCCACAATCAGC
GAAACCAGACCCGCGGCAATAA

Upstream 100 bases:

>100_bases
TCATATGCTTCTCATTGTTACAAACGAGGCTGTACCTTACCGTTTTTATTGTTATGTTGAATCAAGCTAAAATGACAAAT
TATCGCTAAATTCGGACAAA

Downstream 100 bases:

>100_bases
GCGGGCCGACCGGTACGCCGCGAAACAGCGCCACGCCTAAAACAGTGCCTACCAGCAGCCCGGCGACCAGTTGCGGCTGG
CTGCCCATTAAGGTCACGCC

Product: ARAC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQV
TANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKI
RTMVEMMAKGPVEWGSLGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAF
ITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ

Sequences:

>Translated_273_residues
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQV
TANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKI
RTMVEMMAKGPVEWGSLGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAF
ITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ
>Mature_273_residues
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQV
TANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKI
RTMVEMMAKGPVEWGSLGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAF
ITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=273, Percent_Identity=99.2673992673993, Blast_Score=563, Evalue=1e-162,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30471; Mature: 30471

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALW
CCEECCCCCCCCCCHHHHEEEEEEECCCHHHHHHHHHHCCCCEEEEECCEEEEEECCEEE
MVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLAN
ECCCCEEEECCCCCCCCCEEEECCEEEEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHC
RTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRTMVEMMAKGPVEWGSLGQW
CCCHHHCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHH
AGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAF
HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH
ITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ
HHHHHHHCCCCCCHHEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALW
CCEECCCCCCCCCCHHHHEEEEEEECCCHHHHHHHHHHCCCCEEEEECCEEEEEECCEEE
MVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLAN
ECCCCEEEECCCCCCCCCEEEECCEEEEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHC
RTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRTMVEMMAKGPVEWGSLGQW
CCCHHHCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHH
AGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAF
HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH
ITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ
HHHHHHHCCCCCCHHEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]