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The map label for this gene is cspC

Identifier: 82543745

GI number: 82543745

Start: 1232443

End: 1232652

Strand: Reverse

Name: cspC

Synonym: SBO_1236

Alternate gene names: 82543745

Gene position: 1232652-1232443 (Counterclockwise)

Preceding gene: 82543746

Following gene: 82543744

Centisome position: 27.27

GC content: 46.67

Gene sequence:

>210_bases
ATGGCAAAGATTAAAGGTCAGGTTAAGTGGTTCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAA
AGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTGAAAACTCTGGCTGAAGGTCAGAACGTTGAGTTCGAAA
TTCAGGACGGCCAGAAAGGTCCGGCAGCTGTTAACGTAACAGCTATCTGA

Upstream 100 bases:

>100_bases
CTTCTCTGCCGAGCCTTATATTGGTGCCTCATGCAGTAATGTGTCAGTTTTATCTATGTTATGCCTGCGGGCGAAGAAAA
CAATCTAAGGAATTTTTCAA

Downstream 100 bases:

>100_bases
TCGAATCCACTGATCTGAAGTGTGAATACGCTTCAATCTCGCTATAAAGCCTCGTCGAATGCGAGGCTTTTTACTATGCT
TTATCTTCGCTCCTGGCGTT

Product: cold shock-like protein CspC

Products: NA

Alternate protein names: CSP-C

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLKTLAEGQNVEFEIQDGQKGPAAVNVTAI

Sequences:

>Translated_69_residues
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLKTLAEGQNVEFEIQDGQKGPAAVNVTAI
>Mature_68_residues
AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLKTLAEGQNVEFEIQDGQKGPAAVNVTAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Homo sapiens, GI224586882, Length=69, Percent_Identity=46.3768115942029, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI224586884, Length=69, Percent_Identity=46.3768115942029, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI34098946, Length=69, Percent_Identity=46.3768115942029, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI156415990, Length=70, Percent_Identity=44.2857142857143, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=98.5507246376812, Blast_Score=137, Evalue=1e-34,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=81.1594202898551, Blast_Score=116, Evalue=2e-28,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=71.6417910447761, Blast_Score=99, Evalue=5e-23,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=67.1641791044776, Blast_Score=97, Evalue=1e-22,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=70.1492537313433, Blast_Score=97, Evalue=2e-22,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=68.75, Blast_Score=94, Evalue=2e-21,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=49.2307692307692, Blast_Score=73, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508335, Length=72, Percent_Identity=44.4444444444444, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=49.2063492063492, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): CSPC_SHIFL (Q83RI9)

Other databases:

- EMBL:   AE005674
- EMBL:   AE014073
- RefSeq:   NP_707297.1
- RefSeq:   NP_837092.1
- ProteinModelPortal:   Q83RI9
- SMR:   Q83RI9
- EnsemblBacteria:   EBESCT00000088296
- EnsemblBacteria:   EBESCT00000089781
- GeneID:   1024611
- GeneID:   1077891
- GenomeReviews:   AE005674_GR
- GenomeReviews:   AE014073_GR
- KEGG:   sfl:SF1403
- KEGG:   sfx:S1518
- GeneTree:   EBGT00050000010462
- HOGENOM:   HBG717773
- OMA:   DGYRTLE
- ProtClustDB:   PRK10943
- BioCyc:   SFLE198214:AAN43004.1-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7368; Mature: 7237

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLKTLAEGQNVEFEIQDGQKG
CCCCCCEEEEEECCCCCEEEECCCCCCEEEEEEEEECCCCEEEECCCCCEEEEECCCCCC
PAAVNVTAI
CCEEEEEEC
>Mature Secondary Structure 
AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLKTLAEGQNVEFEIQDGQKG
CCCCCEEEEEECCCCCEEEECCCCCCEEEEEEEEECCCCEEEECCCCCEEEEECCCCCC
PAAVNVTAI
CCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12384590; 12704152