Click here to switch to the map view.

The map label for this gene is yohD [H]

Identifier: 82543544

GI number: 82543544

Start: 1026357

End: 1026971

Strand: Reverse

Name: yohD [H]

Synonym: SBO_1008

Alternate gene names: 82543544

Gene position: 1026971-1026357 (Counterclockwise)

Preceding gene: 82543547

Following gene: 82543541

Centisome position: 22.72

GC content: 54.31

Gene sequence:

>615_bases
ATGCTTACAGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTCATCTCACAATATGGTTATGCCGCGCT
GGTGATCGGTAGCCTGGCGGAAGGTGAAACCGTGACTTTGCTGGGAGGCGTTGCGGCACATCAGGGGCTATTAAAGTTCC
CGCTGGTGGTACTTTCTGTGGCGCTTGGCGGCATGATTGGCGACCAGGTGCTTTATCTGTGCGGGCGGCGGTTTGGCGGC
AAGCTGTTACGCCGTTTCTCGAAACATCAGGATAAAATTGAGCGGGCGCAGAAACTTATCCAACGCCATCCGTATCTGTT
TGTCATTGGTACGCGCTTTATGTATGGCTTTCGGGTGATTGGCCCGACGCTGATTGGTGCCAGCCAGCTGCCGCCGAAAA
TCTTTCTGCCGCTGAATATTCTCGGCGCATTTGCCTGGGCGTTGATTTTTACCACTATTGGTTACGCTGGTGGTCAGGTG
ATTGCGCCGTGGTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGG
CGTGCGCTGGTGGCTGAAACGGCGCGGGAAGAAAAAGCCGGATCATCAGGCGTAA

Upstream 100 bases:

>100_bases
AGTTCAAGTATAAGTCAGCTTGTGATTATTTTTTGTTCGCTCATGTAATTTGCACCGTCTGATGTACGTCCTTTTTCAGC
GTGAATGATTTCCAGGGTGT

Downstream 100 bases:

>100_bases
AACCATTGCCCTGGGTAAGGCGTTCGCGCCGCATCCGACATCCGGTGCACCATGCCTGATGCGACGCTTGTGCGTCTTAT
CATGCCTACCAAAATTTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MLTGNQRETDWPMDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGG
KLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQV
IAPWLHNLDQHLKHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA

Sequences:

>Translated_204_residues
MLTGNQRETDWPMDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGG
KLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQV
IAPWLHNLDQHLKHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA
>Mature_204_residues
MLTGNQRETDWPMDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGG
KLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQV
IAPWLHNLDQHLKHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=192, Percent_Identity=100, Blast_Score=383, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22875; Mature: 22875

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTGNQRETDWPMDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSV
CCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
ALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHH
GPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLIL
HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VVVLVVGVRWWLKRRGKKKPDHQA
HHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLTGNQRETDWPMDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSV
CCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
ALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHH
GPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLIL
HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VVVLVVGVRWWLKRRGKKKPDHQA
HHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]