| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is ybhG [H]
Identifier: 82543240
GI number: 82543240
Start: 695763
End: 696761
Strand: Reverse
Name: ybhG [H]
Synonym: SBO_0683
Alternate gene names: 82543240
Gene position: 696761-695763 (Counterclockwise)
Preceding gene: 82543241
Following gene: 82543239
Centisome position: 15.42
GC content: 57.26
Gene sequence:
>999_bases GTGATGAAAAAACCTGTCGTGATCGGACTGGCGGTAGTGGTACTTGCCGCCGTGGTTGCCGGAGGCTACTGGTGGTATCA AAGCCGCCAGGATAACGGCCTGAAGCTGTATGGCAACGTGGATATTCGTACGGTGAATCTTAGTTTCCGTGTTGGGGGGC GCGTTGAATCGCTGGCGGTGGACGAAGGTGATGCGATCAAAGCGGGCCAGGTGCTGGGCGAACTGGATCACAAGCCGTAT GAGATTGCCCTGATGCAGGTGAAAGCGGGCGTCTCGGTGGCACAGGCGCAGTATGACCTGATGCTTGCCGGGTATCGCGA TGAAGAAATCGCTCAGGCCGCCGCAGCGGTGAAACAGGCGCAAGCCGCCTATGACTATGCGCAGAACTTCTATAACCGCC AGCAAGGACTGTGGAAAAGCCGCACCATTTCGGCAAATGACCTGGAAAATGCCCGCTCCTCGCGCAACCAGGCACAGGCA ACGCTGAAATCAGCACAGGATAAATTGCGTCAGTACCGTTCCGGTAACCGTGAACAGGACATCGCTCAGGCGAAAGCCAG CCTCGAACAGGCGCAGGCGCAACTGGCGCAGGCGGAGCTGAATTTACAGGACTCAACGTTGATAGCACCGTCTGATGGCA CACTGTTAACGCGCGCGGTGGAGCCAGGCACGGTTCTCAATGAAGGTGGCACGGTGTTTACCGTTTCACTAACGCGTCCG GTGTGGGTGCGCGCTTATGTTGATGAACGGAATCTTGACCAGGCCCAGCCGGGGCGCAAAGTGCTGCTTTATACCGATGG TCGCCCGGACAAGCCGTATCACGGGCAGATTGGTTTCGTTTCGCCGACTGCTGAATTTACCCCGAAAACCGTCGAAACAC CGGATCTGCGTACCGACCTCGTCTATCGCCTGCGTATTGTGGTGACCGACGCCGATGATGCGTTACGCCAGGGAATGCCG GTGACGGTGCAATTCGGTAACGAGGCAGGACATGAATGA
Upstream 100 bases:
>100_bases GCTGGACCGCGTTCGATGAAGAAAAGACCGAACTGATCAACCAGACGGTGACCTGTCATATCGACCTGATTTTGCAAGGA TTATCGCAAAGGAGTTTGTA
Downstream 100 bases:
>100_bases TGCCGTTATCACGCTGAACGGCCTGGAAAAACGCTTTCCGGGCATGGGCAAGCCCGCCGTCGCGCCGCTCGATTGTACCA TTCACGCCGGTTATGTGACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 332
Protein sequence:
>332_residues MMKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTVNLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPY EIALMQVKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRNQAQA TLKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRP VWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMP VTVQFGNEAGHE
Sequences:
>Translated_332_residues MMKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTVNLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPY EIALMQVKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRNQAQA TLKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRP VWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMP VTVQFGNEAGHE >Mature_332_residues MMKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTVNLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPY EIALMQVKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRNQAQA TLKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRP VWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMP VTVQFGNEAGHE
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0194 family [H]
Homologues:
Organism=Escherichia coli, GI1787013, Length=332, Percent_Identity=98.4939759036145, Blast_Score=664, Evalue=0.0, Organism=Escherichia coli, GI1789900, Length=308, Percent_Identity=30.1948051948052, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI87081796, Length=292, Percent_Identity=26.7123287671233, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1790519, Length=245, Percent_Identity=26.530612244898, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789041, Length=262, Percent_Identity=25.1908396946565, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI87081951, Length=269, Percent_Identity=23.7918215613383, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 - InterPro: IPR022936 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 36470; Mature: 36470
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTVNLSFRVGGRVESLAV CCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEEEEEEEEEEEECCCEEEEEE DEGDAIKAGQVLGELDHKPYEIALMQVKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQA CCCCCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHEEEEEECCCHHHHHHHHHHHHHH QAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRNQAQATLKSAQDKLRQYRSGNREQD HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH IAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRP HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCEEECCCCEEEEEECCC VWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDL EEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHCE VYRLRIVVTDADDALRQGMPVTVQFGNEAGHE EEEEEEEEECCHHHHHCCCCEEEEECCCCCCC >Mature Secondary Structure MMKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTVNLSFRVGGRVESLAV CCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEEEEEEEEEEEECCCEEEEEE DEGDAIKAGQVLGELDHKPYEIALMQVKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQA CCCCCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHEEEEEECCCHHHHHHHHHHHHHH QAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRNQAQATLKSAQDKLRQYRSGNREQD HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH IAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRAVEPGTVLNEGGTVFTVSLTRP HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCEEECCCCEEEEEECCC VWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDL EEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHCE VYRLRIVVTDADDALRQGMPVTVQFGNEAGHE EEEEEEEEECCHHHHHCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA