Click here to switch to the map view.

The map label for this gene is insD1 [C]

Identifier: 82543206

GI number: 82543206

Start: 657351

End: 658073

Strand: Reverse

Name: insD1 [C]

Synonym: SBO_0645

Alternate gene names: 82543206

Gene position: 658073-657351 (Counterclockwise)

Preceding gene: 82543207

Following gene: 82543198

Centisome position: 14.56

GC content: 54.91

Gene sequence:

>723_bases
GTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGA
TACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCCACGTATGGTTATCGTCGGGTATGGGCGCTGCTTC
GCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTG
CTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATG
GTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTG
AGGCACTGCACTGGGCGGTGACTACCGGCGGCTTCAACAGTGAAACAGTACTGGACGTCATGCTGGGTGCGGTGGAACGC
CGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACG
CCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCT
TCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGGGTAAGCGTCAACGGAGCACCGTATTGACGCTTATTTATTGG
TGA

Upstream 100 bases:

>100_bases
TCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCT
TAGTCAGCCGTTGTCTCCGG

Downstream 100 bases:

>100_bases
GTGCTACGTTCCATGGCAGGAGTTCGTCAACACGGTTGGAAGGCCATTCCGGCAGTACGCTCAGGATATAGCGCAGATAC
GCTTCCGGATCGATACCGTT

Product: IS2 ORF2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL
LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVLDVMLGAVER
RFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMGKRQRSTVLTLIYW

Sequences:

>Translated_240_residues
MSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL
LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVLDVMLGAVER
RFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMGKRQRSTVLTLIYW
>Mature_239_residues
SRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLL
ERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVLDVMLGAVERR
FGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMGKRQRSTVLTLIYW

Specific function: Involved in the transposition of the insertion sequence is2 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790724, Length=228, Percent_Identity=98.6842105263158, Blast_Score=467, Evalue=1e-133,
Organism=Escherichia coli, GI1789424, Length=228, Percent_Identity=98.6842105263158, Blast_Score=467, Evalue=1e-133,
Organism=Escherichia coli, GI1789224, Length=228, Percent_Identity=98.6842105263158, Blast_Score=467, Evalue=1e-133,
Organism=Escherichia coli, GI1788305, Length=228, Percent_Identity=98.6842105263158, Blast_Score=467, Evalue=1e-133,
Organism=Escherichia coli, GI1787669, Length=228, Percent_Identity=98.6842105263158, Blast_Score=467, Evalue=1e-133,
Organism=Escherichia coli, GI1786558, Length=228, Percent_Identity=98.6842105263158, Blast_Score=467, Evalue=1e-133,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR002514 [H]

Pfam domain/function: PF00665 rve; PF01527 Transposase_8 [H]

EC number: NA

Molecular weight: Translated: 27640; Mature: 27509

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELD
CCCCEEEEEEECCCCHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
GMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGE
CCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
RLRVTFALDCCDREALHWAVTTGGFNSETVLDVMLGAVERRFGNDLPSSPVEWLTDNGSC
EEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCE
YRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMGKRQRSTVLTLIYW
EECHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
>Mature Secondary Structure 
SRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELD
CCCEEEEEEECCCCHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
GMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGE
CCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
RLRVTFALDCCDREALHWAVTTGGFNSETVLDVMLGAVERRFGNDLPSSPVEWLTDNGSC
EEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCE
YRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMGKRQRSTVLTLIYW
EECHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA