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The map label for this gene is ybeF [H]

Identifier: 82543075

GI number: 82543075

Start: 510835

End: 511635

Strand: Reverse

Name: ybeF [H]

Synonym: SBO_0493

Alternate gene names: 82543075

Gene position: 511635-510835 (Counterclockwise)

Preceding gene: 161984972

Following gene: 82543074

Centisome position: 11.32

GC content: 47.07

Gene sequence:

>801_bases
GTGCTTAATCTGCCCCCCTCGGCAATCAGTCAGTCTATTCAGAAACTGCGCGTTATATTCCCTGACCCATTGTTTATTCG
CAAAGGCCAAGGTGTCACTCCTACCGCATTTGCGATGCATCTACATGAGTATATCAGTCAGGGCCTTGAGTCCATTCTTG
GCGCGCTGGATATCGAAGGAAGCTATGATAAGCAACGAACGATAACTATTGCGACCACTCCCTCGGTCGGAGCCCTGGTC
CTTCCTGTCATCTATCGGGCGATTAAAACTCACTATCCGCAGCTTTTACTGCGCAACCCGCCCATCAGCGACGCGGAAAA
CCAACTCAGTCAGTTTCAAACCGATCTCATCATCGATAACATGTTTTGCACCAATCGTACGGTGCAACATCATGTTCTGT
TCACCGACAATATGGTGTTAATTTGCCGCGAGGGAAATCCACTACTCTCTTTAGAAGATGACAGAGAGACTATCGACAAC
GCTGCGCATGTACTTCTGTTACCGGAAGAGCAAAATTTCAGCGGTCTGCGGCAGAGAGTTCAAGAAATGTTTCCGGACCG
GCAAATCAATTTCACCAGCTACAACATTTTGACAATCGCTGCACTGGTTGCCAACAGTGACATGTTAGCGATTATTCCCA
GCCGTTTTTATAACCTGTTTAGCCGCTGCTGGCCGCTGGAAAAACTGCCTTTTCCGTCCTTAAATAAGGAGCAAATAGAT
TTCTCTATCCACTACAACAAATTCAGCCTGCGTGATCCCATCCTGCACGGAGTAATAGATGTTATCCGTAATGCATTTTG
A

Upstream 100 bases:

>100_bases
TAAACCACAAATATTTACAACCTTACGAAATATTGATCTTAACCTTCTGACTATTTTTGAAGCTGTATATGTACATAAAG
GGATCGTTAATGCAGCGAAA

Downstream 100 bases:

>100_bases
AAAAGTATTGTTACAGCCAGATCACAGCGCAGAACGATAAAATGGCACAATCCAACAACAATTTTACATTTTCGCGACCG
CTTTGGCTGCTTTCAGGTCC

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MLNLPPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDKQRTITIATTPSVGALV
LPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDN
AAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNKEQID
FSIHYNKFSLRDPILHGVIDVIRNAF

Sequences:

>Translated_266_residues
MLNLPPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDKQRTITIATTPSVGALV
LPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDN
AAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNKEQID
FSIHYNKFSLRDPILHGVIDVIRNAF
>Mature_266_residues
MLNLPPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDKQRTITIATTPSVGALV
LPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDN
AAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNKEQID
FSIHYNKFSLRDPILHGVIDVIRNAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081766, Length=266, Percent_Identity=98.8721804511278, Blast_Score=542, Evalue=1e-155,
Organism=Escherichia coli, GI1786820, Length=272, Percent_Identity=27.5735294117647, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87081684, Length=238, Percent_Identity=22.6890756302521, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790147, Length=287, Percent_Identity=22.6480836236934, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30287; Mature: 30287

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNLPPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEG
CCCCCHHHHHHHHHHHEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDN
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHC
MFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLLPEEQNFSGLRQRV
HHHCCCCEEEEEEEECCEEEEEECCCCEEEECCHHHHHCCCEEEEEECCCCCHHHHHHHH
QEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNKEQID
HHHCCCCEECCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHEE
FSIHYNKFSLRDPILHGVIDVIRNAF
EEEEECEECCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLNLPPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEG
CCCCCHHHHHHHHHHHEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDN
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHC
MFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLLPEEQNFSGLRQRV
HHHCCCCEEEEEEEECCEEEEEECCCCEEEECCHHHHHCCCEEEEEECCCCCHHHHHHHH
QEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNKEQID
HHHCCCCEECCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHEE
FSIHYNKFSLRDPILHGVIDVIRNAF
EEEEECEECCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444795; 8905232; 9278503 [H]