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The map label for this gene is ybaV

Identifier: 82542930

GI number: 82542930

Start: 352785

End: 353156

Strand: Direct

Name: ybaV

Synonym: SBO_0336

Alternate gene names: 82542930

Gene position: 352785-353156 (Clockwise)

Preceding gene: 82542929

Following gene: 82542931

Centisome position: 7.81

GC content: 54.84

Gene sequence:

>372_bases
ATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCTGTGCCGGAATGTCTCATAGCGCGCTGGCGGCAGC
TTCTGTGGCGAAACCGACGGCGGTAGAAACCAAAGCGGAAGCTCCTGCAGCACAAAGTAAAGCAGCAGTACCGGCGAAAG
CCAGTGACGAAGAAGGCACCCGGGTCAGCATTAATAATGCCAGCGCGGAAGAGCTAGCCCGCGCGATGAATGGCGTTGGC
CTGAAGAAAGCGCAGGCGATTGTCAGTTATCGCGAAGAGTACGGTCCGTTTAAAACAGTGGAGGATCTAAAGCAGGTGCC
GGGGATGGGCAATTCGCTGGTGGAACGTAATCTGGCGGTATTAACCCTGTAA

Upstream 100 bases:

>100_bases
TCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTA
ACAAACAAGGAGAAAACAGT

Downstream 100 bases:

>100_bases
TTAATTTGCATAGTGGCAATTTTTTGCCAGACTGAAGAGGTCATACCAGTTATGACCTCTGTACTTATAACAACAACGTA
AGGTTATTGCGCTATGCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVG
LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL

Sequences:

>Translated_123_residues
MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVG
LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL
>Mature_123_residues
MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVG
LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains

Homologues:

Organism=Escherichia coli, GI1786646, Length=123, Percent_Identity=100, Blast_Score=244, Evalue=8e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBAV_ECOLI (P0AAR8)

Other databases:

- EMBL:   D82943
- EMBL:   U82664
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   B64774
- RefSeq:   AP_001092.1
- RefSeq:   NP_414976.1
- ProteinModelPortal:   P0AAR8
- SMR:   P0AAR8
- STRING:   P0AAR8
- EnsemblBacteria:   EBESCT00000001109
- EnsemblBacteria:   EBESCT00000018029
- GeneID:   945884
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0432
- KEGG:   eco:b0442
- EchoBASE:   EB3039
- EcoGene:   EG13250
- eggNOG:   COG1555
- GeneTree:   EBGT00050000008386
- HOGENOM:   HBG729460
- OMA:   DYRTQNG
- ProtClustDB:   CLSK879668
- BioCyc:   EcoCyc:G6243-MONOMER
- Genevestigator:   P0AAR8
- InterPro:   IPR004509
- InterPro:   IPR003583
- SMART:   SM00278
- TIGRFAMs:   TIGR00426

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12704; Mature: 12704

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV
EEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHCCEEE
LTL
EEC
>Mature Secondary Structure
MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV
EEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHCCEEE
LTL
EEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503