Definition Shigella boydii Sb227, complete genome.
Accession NC_007613
Length 4,519,823

Click here to switch to the map view.

The map label for this gene is ykiA [H]

Identifier: 82542883

GI number: 82542883

Start: 297839

End: 298120

Strand: Direct

Name: ykiA [H]

Synonym: SBO_0287

Alternate gene names: 82542883

Gene position: 297839-298120 (Clockwise)

Preceding gene: 82542882

Following gene: 82542888

Centisome position: 6.59

GC content: 48.58

Gene sequence:

>282_bases
TTGCTGCAAAGTCGCAATGATCATTTGCGCCAAACGGCATTACGCAACGCACATACCCCGGCGTCGTTGTTAACGACATT
GACCGAGTCTCGGCATCGGTCGCTAGCTATGAATAATCCACAGCTCGCTGCCGATGTGAAAACGACGTGGTTAAAAGAGG
ATCCATCATTACTCTTATTTGTCGAACAACCCGATCTTTCGCTGTTACGGGATTTAGTGAAAACCGGGGCAATGCGGAAA
ATTCGCAGTGAAGCGCGTCACTGGCTTGAGGAAAAACAATGA

Upstream 100 bases:

>100_bases
AATTCATCAAGGTTGATATAAATATCAGTGAAGATCTCCAGATATTGTTGCGGAACTGGCTACGATAAAAGATAAATCAG
ATGATGAATGGTGGCGTGCA

Downstream 100 bases:

>100_bases
CACAACGTCCATGGAGCAAGTTACAGCATAAAACGCATAATATTGCTGCGCTAAAAATTATTGTCCGCCGTAGCGAATAA
TTATATCCCTGGTGTGGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MLQSRNDHLRQTALRNAHTPASLLTTLTESRHRSLAMNNPQLAADVKTTWLKEDPSLLLFVEQPDLSLLRDLVKTGAMRK
IRSEARHWLEEKQ

Sequences:

>Translated_93_residues
MLQSRNDHLRQTALRNAHTPASLLTTLTESRHRSLAMNNPQLAADVKTTWLKEDPSLLLFVEQPDLSLLRDLVKTGAMRK
IRSEARHWLEEKQ
>Mature_93_residues
MLQSRNDHLRQTALRNAHTPASLLTTLTESRHRSLAMNNPQLAADVKTTWLKEDPSLLLFVEQPDLSLLRDLVKTGAMRK
IRSEARHWLEEKQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ydbD C-terminal region [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10740; Mature: 10740

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQSRNDHLRQTALRNAHTPASLLTTLTESRHRSLAMNNPQLAADVKTTWLKEDPSLLLF
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEE
VEQPDLSLLRDLVKTGAMRKIRSEARHWLEEKQ
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLQSRNDHLRQTALRNAHTPASLLTTLTESRHRSLAMNNPQLAADVKTTWLKEDPSLLLF
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEE
VEQPDLSLLRDLVKTGAMRKIRSEARHWLEEKQ
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]