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The map label for this gene is ymfK [H]

Identifier: 82542851

GI number: 82542851

Start: 270767

End: 271441

Strand: Direct

Name: ymfK [H]

Synonym: SBO_0255

Alternate gene names: 82542851

Gene position: 270767-271441 (Clockwise)

Preceding gene: 82542846

Following gene: 82542854

Centisome position: 5.99

GC content: 44.74

Gene sequence:

>675_bases
ATGAAAACAATCCATGACATCCGGCGGTCTAACGCCAGAAAACTGAGAGATGGTGTTGGCGGGAATTCTTCCTTTGCCAC
TATGATTGATCGCGAGCCAACCCAGACCAGCAGGTTTATGGGAGATGGTGCTACTAAAAATATCGGTGACAGCATGGCAC
GACACATTGAAAAATGTTTCGACCTGCCTATCGGATGGCTCGATCAAGAACACCAGACAACGAACATCACAAAAAAACCT
GAAGTTTCAATCACTAACAAACAAATAACGTTAGTCCCTGTCATATCATGGGTACAGGCCGGAGCATGGAAAGAAGTTGG
CTATTCTGAGGTTGATTTGAGCACAGCAGAAACTTATCCCTGCCCTGTACCCTGTGGCGAAATGACTTATATCTTGCGGG
TGATTGGTGATTCAATGATTGATGAGTACCGTCCGGGAGACATGATTTTTGTTGATCCTGAAGTCCCTGCTTGCCACGGT
GACGACGTTATTGCGTTGATGCACGATACAGGCGAAACCACTTTCAAGCGATTGATAGAAGATGGAACACAGCGTTATCT
CAAAGCATTACACCCAAACTGGCCTGAGCCCTACATTAAGATTAACGGTAATTGCTCTATAATTGGCACTGTGATTTTCT
CGGGAAAACCAAGAAGATACAAAATAAAGGCCTAA

Upstream 100 bases:

>100_bases
ACGCTTCCATACAATATGTACCTCCAGTGTACACATCACATGATTGAAATGAACCTTCAAGATACTTGTACCTTAGCGGT
ACAAGGGTTTTAATTTCGTT

Downstream 100 bases:

>100_bases
TCAATATTTATGAACCTGCTTCGGCAGGTTTTTTTATACTTGACAATGTACCCCATGGACACACAATGTACCAAAACGAA
ACAACAAACAGGCAGGATGC

Product: phage repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCFDLPIGWLDQEHQTTNITKKP
EVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHG
DDVIALMHDTGETTFKRLIEDGTQRYLKALHPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA

Sequences:

>Translated_224_residues
MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCFDLPIGWLDQEHQTTNITKKP
EVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHG
DDVIALMHDTGETTFKRLIEDGTQRYLKALHPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA
>Mature_224_residues
MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCFDLPIGWLDQEHQTTNITKKP
EVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHG
DDVIALMHDTGETTFKRLIEDGTQRYLKALHPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA

Specific function: Unknown

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787391, Length=224, Percent_Identity=98.6607142857143, Blast_Score=464, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 25146; Mature: 25146

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCF
CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
DLPIGWLDQEHQTTNITKKPEVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYP
CCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEHHHHHHHCCCHHHCCCCEECCCCCCCCC
CPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIE
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHH
DGTQRYLKALHPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA
HHHHHHHHHHCCCCCCCEEEECCCEEEEEEEEECCCCCEEEECC
>Mature Secondary Structure
MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCF
CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
DLPIGWLDQEHQTTNITKKPEVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYP
CCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEHHHHHHHCCCHHHCCCCEECCCCCCCCC
CPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIE
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHH
DGTQRYLKALHPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA
HHHHHHHHHHCCCCCCCEEEECCCEEEEEEEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]