| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
Click here to switch to the map view.
The map label for this gene is glnD [H]
Identifier: 82542766
GI number: 82542766
Start: 171996
End: 174668
Strand: Reverse
Name: glnD [H]
Synonym: SBO_0155
Alternate gene names: 82542766
Gene position: 174668-171996 (Counterclockwise)
Preceding gene: 82542767
Following gene: 82542765
Centisome position: 3.86
GC content: 53.5
Gene sequence:
>2673_bases ATGAATACCCTTCCAGAACAGTACGCAAACACCGCTCTCCCCACCCTGCCCGGTCAACCGCAAAATCCATGCGTCTGGCC CCGTGATGAATTAACCGTCGGTGGGATAAAAGCCCATATCGATACTTTCCAGCGTTGGCTGGGTGATGCCTTTGACAATG GGATCTCTGCAGAACAGTTGATTGAGGCGCGCACCGAGTTTATCGACCAGCTCCTGCAACGATTATGGATTGAAGCGGGA TTCAGCCAGATTGCCGACCTGGCATTGGTCGCCGTCGGTGGCTACGGTCGTGGCGAGCTGCATCCACTTTCTGACATCGA TTTACTGATTTTAAGCCGTAAAAAGCTCCCGGACGATCAGGCGCAAAAAGTGGGCGAGCTGTTAACGCTGCTCTGGGATG TAAAGCTGGAAGTCGGTCATAGTGTGCGCACGCTTGAAGAGTGCATGCTGGAAGGGTTATCGGATTTAACCGTCGCCACC AATTTAATCGAATCCCGCTTATTAATTGGCGATGTTGCGCTCTTCCTCGAACTGCAAAAACATATTTTTAGCGAAGGATT CTGGCCTTCCGACAAGTTCTACGCGGCGAAAGTTGAAGAACAGAACCAGCGCCATCAGCGTTACCACGGCACCAGCTACA ATCTTGAACCAGACATCAAAAGTAGCCCTGGCGGCTTGCGCGATATCCACACTCTGCAATGGGTGGCCCGCCGTCATTTT GGCGCAACATCGCTGGATGAAATGGTTGGGTTTGGCTTCTTAACCTCAGCGGAGCGGGCGGAATTAAACGAATGTCTGCA TATACTGTGGCGTATTCGCTTTGCCCTGCATCTGGTCGTCAGCCGTTACGATAATCGCCTGTTATTCGATCGCCAACTTA GCGTCGCTCAGCGTCTGAATTACAGTGGTGAAGGCAACGAACCGGTCGAGCGGATGATGAAGGATTACTTCCGCGTTACA CGCCGCGTCAGTGAACTCAACCAGATGCTGCTGCAACTGTTCGATGAAGCCATCCTCGCCCTTCCTGCCGACGAAAAACC ACGTCCAATCGACGATGAGTTTCAGCTACGCGGTACGCTAATCGACCTGCGTGATGAAACACTATTTATGCGCCAGCCGG AAGCCATCTTGCGTATGTTCTACACCATGGTGCGCAACAGTGCGATCACCGGCATTTACTCCACCACGCTGCGCCAGTTA CGCCATGCCCGTCGCCATCTGCAACAACCGCTGTGTAATATTCCGGAAGCACGAAAACTGTTTTTGAGCATTCTGCGTCA CCCCGGAGCGGTGCGGCGCGGGCTATTGCCAATGCATCGCCATAGCGTGCTCGGCGCGTATATGCCGCAATGGTCGCATA TCGTCGGGCAGATGCAGTTTGATCTGTTCCACGCCTACACGGTGGATGAACATACTATCCGCGTGATGCTGAAACTGGAG AGTTTTGCCAGTGAAGAAACGCGCCAGCGCCATCCGTTGTGTGTGGACGTCTGGCCGCGCCTGCCGTCAACTGAGCTGAT TTTCATCGCCGCGCTGTTTCACGATATCGCCAAAGGACGCGGCGGCGACCACTCCATTCTCGGTGCTCAGGATGTAGTGC ATTTTGCAGAACTCCACGGGCTGAACTCACGCGAAACACAGCTGGTTGCCTGGCTGGTTCGCCAGCACTTGCTGATGTCG GTGACAGCACAACGCCGCGATATTCAGGACCCTGAAGTCATCAAGCAGTTTGCCGAAGAAGTTCAAACGGAAAATCGTCT GCGCTATCTGGTATGCCTGACAGTGGCTGACATTTGCGCCACCAACGAAACGCTGTGGAATAGCTGGAAGCAAAGTCTGT TGCGCGAACTCTATTTTGCCACCGAAAAGCAGCTACGACGCGGAATGCAAAACACGCCGGATATGCGCGAACGGGTTCGC CATCACCAACTCCAGGCACTGGCACTACTGCGCATGGATAACATCGACGAAGAGGCGCTGCACCAAATTTGGTCACGCTG TCGTGCTAACTATTTTGTCCGCCATAGCCCAAATCAACTGGCCTGGCATGCCCGCCATTTATTACAGCATGATTTAAGCA AACCACTGGTATTGCTTAGCCCGCAGGCTACGCGTGGAGGCACCGAGATTTTTATCTGGAGCCCGGACCGCCCCTATCTG TTTGCCGCCGTCTGTGCCGAATTAGACCGCCGCAATTTAAGTGTTCACGACGCACAAATTTTCACCACTCGCGACGGTAT GGCGATGGATACCTTTATCGTGCTGGAACCCGATGGCAGCCCGCTGTCCGCAGATCGTCATGAGGTTATTCGGTTTGGTC TGGAGCAAGTACTGACGCAAAGTAGCTGGCAGCCACCGCAGCCCCGTCGCCAACCCGCCAAATTACGCCATTTTACTGTT GAAACCGAAGTAACGTTTTTGCCGACCCATACCGACCGCAAATCGTTCCTTGAGCTTATCGCGCTCGACCAGCCAGGACT GCTGGCGAGAGTCGGGAAAATTTTTGCCGATCTGGGAATTTCGCTTCATGGTGCCCGAATTACAACCATTGGCGAGCGAG TAGAAGATTTATTCATAATTGCCACCGCTGACCGGCGTGCGCTTAATAACGAGTTGCAGCAGGAAGTGCATCAGCGGTTG ACAGAGGCCCTCAATCCAAACGATAAAGGGTGA
Upstream 100 bases:
>100_bases GATGACACCATCCCGGCGATAATCTCGCACGACGAATAAGATGAAGCCGGCGAATGCCGGCTTTTTTAATGCGATAATTT AATCTTATGAGTGGCGCACA
Downstream 100 bases:
>100_bases TGTGTTTACTGATATGAAAAGAGTTTAACAATGCAGCAGTTACAGAACATTATTGAAACCGCTTTTGAACGCCGTGCCGA GATCACGCCAACCAACGCAG
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 890; Mature: 890
Protein sequence:
>890_residues MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQRWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAG FSQIADLALVAVGGYGRGELHPLSDIDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVAT NLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHF GATSLDEMVGFGFLTSAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVT RRVSELNQMLLQLFDEAILALPADEKPRPIDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVRNSAITGIYSTTLRQL RHARRHLQQPLCNIPEARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLE SFASEETRQRHPLCVDVWPRLPSTELIFIAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMS VTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVR HHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAWHARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYL FAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHFTV ETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRL TEALNPNDKG
Sequences:
>Translated_890_residues MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQRWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAG FSQIADLALVAVGGYGRGELHPLSDIDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVAT NLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHF GATSLDEMVGFGFLTSAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVT RRVSELNQMLLQLFDEAILALPADEKPRPIDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVRNSAITGIYSTTLRQL RHARRHLQQPLCNIPEARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLE SFASEETRQRHPLCVDVWPRLPSTELIFIAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMS VTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVR HHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAWHARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYL FAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHFTV ETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRL TEALNPNDKG >Mature_890_residues MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQRWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAG FSQIADLALVAVGGYGRGELHPLSDIDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVAT NLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHF GATSLDEMVGFGFLTSAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVT RRVSELNQMLLQLFDEAILALPADEKPRPIDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVRNSAITGIYSTTLRQL RHARRHLQQPLCNIPEARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLE SFASEETRQRHPLCVDVWPRLPSTELIFIAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMS VTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVR HHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAWHARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYL FAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHFTV ETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRL TEALNPNDKG
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=890, Percent_Identity=99.6629213483146, Blast_Score=1823, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 102398; Mature: 102398
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQRWLGDAFDNGISAEQL CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHCCCCCHHHH IEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHPLSDIDLLILSRKKLPDDQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHEEECCCCCCHH AQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVATNLIESRLLIGDVALFLELQK HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH HIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHF HHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC GATSLDEMVGFGFLTSAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLN CCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCC YSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLFDEAILALPADEKPRPIDDEFQLRGTL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCEEE IDLRDETLFMRQPEAILRMFYTMVRNSAITGIYSTTLRQLRHARRHLQQPLCNIPEARKL EECCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH FLSILRHPGAVRRGLLPMHRHSVLGAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLE HHHHHHCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHH SFASEETRQRHPLCVDVWPRLPSTELIFIAALFHDIAKGRGGDHSILGAQDVVHFAELHG HHHCHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC LNSRETQLVAWLVRQHLLMSVTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEAL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH HQIWSRCRANYFVRHSPNQLAWHARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYL HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCHH FAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQ HHHHHHHHHHCCCCEECEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHC SSWQPPQPRRQPAKLRHFTVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGI CCCCCCCCCCCCCHHHEEEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCC SLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRLTEALNPNDKG EECCCCHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQRWLGDAFDNGISAEQL CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHCCCCCHHHH IEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHPLSDIDLLILSRKKLPDDQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHEEECCCCCCHH AQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVATNLIESRLLIGDVALFLELQK HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH HIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHF HHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC GATSLDEMVGFGFLTSAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLN CCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCC YSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLFDEAILALPADEKPRPIDDEFQLRGTL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCEEE IDLRDETLFMRQPEAILRMFYTMVRNSAITGIYSTTLRQLRHARRHLQQPLCNIPEARKL EECCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH FLSILRHPGAVRRGLLPMHRHSVLGAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLE HHHHHHCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHH SFASEETRQRHPLCVDVWPRLPSTELIFIAALFHDIAKGRGGDHSILGAQDVVHFAELHG HHHCHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC LNSRETQLVAWLVRQHLLMSVTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEAL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH HQIWSRCRANYFVRHSPNQLAWHARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYL HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCHH FAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQ HHHHHHHHHHCCCCEECEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHC SSWQPPQPRRQPAKLRHFTVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGI CCCCCCCCCCCCCHHHEEEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCC SLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRLTEALNPNDKG EECCCCHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA