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The map label for this gene is 78780154

Identifier: 78780154

GI number: 78780154

Start: 1661515

End: 1662078

Strand: Reverse

Name: 78780154

Synonym: PMT9312_1769

Alternate gene names: NA

Gene position: 1662078-1661515 (Counterclockwise)

Preceding gene: 78780155

Following gene: 78780148

Centisome position: 97.24

GC content: 31.03

Gene sequence:

>564_bases
ATGGATTCAAGGAGAATTAGAAATCTTAGAAATAGTTTTGATAGAAATATTGTTGATAAACAAGTTGATAAAATTTTTGA
AACTGGAAGACAATTTGTCGATGGAGTATCTGGTGCTAGGCCAGGTAAAAGAAGGAACTCAGATTTTCAAGGAATAACAA
GTAAGAGTGTTAAAAAAGTAGGAAGATGGGTATCTGAAAAAGTAGATTTATTTTTTGATGAAGATAATGATGATTGGTAT
GATGATAATTTTTACGATGATAACAGCGATATTAAGACATTTACTAGAGAATCAAATTCTTATGAATCTGCTAAACCGTA
CTCAAAAAGACCTTTAGAAGCAATATCTTTAAGGCAACCAAAAAACTTACAGACAACTGAGCAAAAAAAATTACCTTATG
TGAAAGAGAGTAAAGATGAAGATTGGCCAGATGAAATGGATTTCAAAGTTGAAAGATGGCAAAGAGCTTCAGAAAAAGAG
AATACCAAATCAAGAGATGAATCAAACCAAAAAGGTCAATTAAAATCAAGAAATCTTCCCAGATCAAGAAGAAGAAGAGT
ATAG

Upstream 100 bases:

>100_bases
TAATTTTGTTTGATTAAAAATATAAGATGTGTTTTTGTTTCTATATTTGGAATTATTTATTTTTTTAATGTAATTTATAT
TTTAAAAAGCATAATAATTT

Downstream 100 bases:

>100_bases
TTGCGTAAATTCTTTAATTCCTGAATAACCTAATAAACTTTCTAAATGTGGATTGAACACTTCTCTAATAATTGTTAGGG
GCTTTTTATCTCGAAAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: RNA Helicase

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MDSRRIRNLRNSFDRNIVDKQVDKIFETGRQFVDGVSGARPGKRRNSDFQGITSKSVKKVGRWVSEKVDLFFDEDNDDWY
DDNFYDDNSDIKTFTRESNSYESAKPYSKRPLEAISLRQPKNLQTTEQKKLPYVKESKDEDWPDEMDFKVERWQRASEKE
NTKSRDESNQKGQLKSRNLPRSRRRRV

Sequences:

>Translated_187_residues
MDSRRIRNLRNSFDRNIVDKQVDKIFETGRQFVDGVSGARPGKRRNSDFQGITSKSVKKVGRWVSEKVDLFFDEDNDDWY
DDNFYDDNSDIKTFTRESNSYESAKPYSKRPLEAISLRQPKNLQTTEQKKLPYVKESKDEDWPDEMDFKVERWQRASEKE
NTKSRDESNQKGQLKSRNLPRSRRRRV
>Mature_187_residues
MDSRRIRNLRNSFDRNIVDKQVDKIFETGRQFVDGVSGARPGKRRNSDFQGITSKSVKKVGRWVSEKVDLFFDEDNDDWY
DDNFYDDNSDIKTFTRESNSYESAKPYSKRPLEAISLRQPKNLQTTEQKKLPYVKESKDEDWPDEMDFKVERWQRASEKE
NTKSRDESNQKGQLKSRNLPRSRRRRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22313; Mature: 22313

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRRIRNLRNSFDRNIVDKQVDKIFETGRQFVDGVSGARPGKRRNSDFQGITSKSVKKV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
GRWVSEKVDLFFDEDNDDWYDDNFYDDNSDIKTFTRESNSYESAKPYSKRPLEAISLRQP
HHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCC
KNLQTTEQKKLPYVKESKDEDWPDEMDFKVERWQRASEKENTKSRDESNQKGQLKSRNLP
CCCCCHHHHCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
RSRRRRV
HHHHCCC
>Mature Secondary Structure
MDSRRIRNLRNSFDRNIVDKQVDKIFETGRQFVDGVSGARPGKRRNSDFQGITSKSVKKV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
GRWVSEKVDLFFDEDNDDWYDDNFYDDNSDIKTFTRESNSYESAKPYSKRPLEAISLRQP
HHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCC
KNLQTTEQKKLPYVKESKDEDWPDEMDFKVERWQRASEKENTKSRDESNQKGQLKSRNLP
CCCCCHHHHCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
RSRRRRV
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA