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The map label for this gene is 78780140

Identifier: 78780140

GI number: 78780140

Start: 1646376

End: 1646933

Strand: Direct

Name: 78780140

Synonym: PMT9312_1755

Alternate gene names: NA

Gene position: 1646376-1646933 (Clockwise)

Preceding gene: 78780139

Following gene: 78780141

Centisome position: 96.32

GC content: 27.42

Gene sequence:

>558_bases
ATGGAAATATCTTCCTTTCAATCCTATATAATAATTCTTTTTGTAGTACTAATAATAATTTCTATTTTTGTTTTAAGACA
ATTTTTAAGAACAAGAAGTGAAGAATTGAATTTAGTAAAATTTGAACAAAAAGGTTTAGATTCCATAACTCAAGCCACAG
AATTATATGAATTTGGCTCTATTCAGATAAAAAAAAGATTATATTCTGAAGCAACTAAGACTTTTTTAAAAGCTATTGAT
AATTATGAAAATGAACCTGATGAGGCCAAAGCCATTATAAATAATGCTTTAGGATTTTCTTATGCTGCCCAAAATGAGTT
TAAAAAAGCAATTAAACACTATAACTCAGCAATAAAATCACTCCCCGAATATCCAATAGCCTTAAATAATCTTGCATCAG
CACAACAGCGTTTATTGGAATATGACTTGGCATATGCCACTTATCAGAAGGTTTTAGTTATAGATCCAAAAAACAAAACC
GCAATTAAAAAAAGTAAGGAATTAGAAAAAAGAAATAACTACAAACCTTATCAAGGGATAAAAGATAAAGGATTTTAA

Upstream 100 bases:

>100_bases
TGCTCAATTAGCCTTAAATGACCCAAAATGTTTTGAAAAAATAGTTTCTTCAGTTAGCAATTAAAAAAAAGAATATAATC
TTAAAAAATAATTCTAAATA

Downstream 100 bases:

>100_bases
ATATGGACAATTATTCATCTTTACGAATTGGAGGAAAACAATTTTCCAGTAGATTAATGGTAGGTACTGGCAAATACAAA
TCTACACAAGATATGGTAGA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: Photosystem I Assembly Related Protein Ycf; Tetratricopeptide Repeat Domain Protein; Photosystem I Assembly Protein; Photosystem I Assembly Related Protein; Tetratricopeptide Repeat Protein; TPR Repeat-Containing Photosystem I Assembly Protein Ycf; TPR Domain-Containing Protein

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MEISSFQSYIIILFVVLIIISIFVLRQFLRTRSEELNLVKFEQKGLDSITQATELYEFGSIQIKKRLYSEATKTFLKAID
NYENEPDEAKAIINNALGFSYAAQNEFKKAIKHYNSAIKSLPEYPIALNNLASAQQRLLEYDLAYATYQKVLVIDPKNKT
AIKKSKELEKRNNYKPYQGIKDKGF

Sequences:

>Translated_185_residues
MEISSFQSYIIILFVVLIIISIFVLRQFLRTRSEELNLVKFEQKGLDSITQATELYEFGSIQIKKRLYSEATKTFLKAID
NYENEPDEAKAIINNALGFSYAAQNEFKKAIKHYNSAIKSLPEYPIALNNLASAQQRLLEYDLAYATYQKVLVIDPKNKT
AIKKSKELEKRNNYKPYQGIKDKGF
>Mature_185_residues
MEISSFQSYIIILFVVLIIISIFVLRQFLRTRSEELNLVKFEQKGLDSITQATELYEFGSIQIKKRLYSEATKTFLKAID
NYENEPDEAKAIINNALGFSYAAQNEFKKAIKHYNSAIKSLPEYPIALNNLASAQQRLLEYDLAYATYQKVLVIDPKNKT
AIKKSKELEKRNNYKPYQGIKDKGF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21379; Mature: 21379

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEISSFQSYIIILFVVLIIISIFVLRQFLRTRSEELNLVKFEQKGLDSITQATELYEFGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
IQIKKRLYSEATKTFLKAIDNYENEPDEAKAIINNALGFSYAAQNEFKKAIKHYNSAIKS
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LPEYPIALNNLASAQQRLLEYDLAYATYQKVLVIDPKNKTAIKKSKELEKRNNYKPYQGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
KDKGF
CCCCC
>Mature Secondary Structure
MEISSFQSYIIILFVVLIIISIFVLRQFLRTRSEELNLVKFEQKGLDSITQATELYEFGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
IQIKKRLYSEATKTFLKAIDNYENEPDEAKAIINNALGFSYAAQNEFKKAIKHYNSAIKS
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LPEYPIALNNLASAQQRLLEYDLAYATYQKVLVIDPKNKTAIKKSKELEKRNNYKPYQGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
KDKGF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA