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The map label for this gene is secY

Identifier: 78780017

GI number: 78780017

Start: 1528797

End: 1530116

Strand: Reverse

Name: secY

Synonym: PMT9312_1632

Alternate gene names: 78780017

Gene position: 1530116-1528797 (Counterclockwise)

Preceding gene: 78780018

Following gene: 78780016

Centisome position: 89.52

GC content: 35.45

Gene sequence:

>1320_bases
ATGTTTGTCAACAAAAGTAGAAATCCTAGCGCTTCTGAAATACTATCCCAATTATTTTTAAATAAAGAGCTAAGGAGTAG
AGTTTTAACAACTTTAGGGCTTCTTCTTTTAGTAAGACTTGGTATCTATATCCCCATGCCAGGTATTGATAGGGTTGCTT
TTAAAAGTTTTATAGATCAAGGAGGTCAATTAATAGGATTCTTAGATATTTTTACTGGAGGAGGAATTTCAACCTTAGGA
ATCTTCGCATTAGGCATACTTCCTTTTATAAACGCATCAATTATTATTCAGCTTCTTACAGCTTCCTTACCTGTTCTTGA
AGATTTACAAAAAAATGAGGGGGAAGCTGGTAGAAGAAAAATTGCTCAAATAACTAGATATGTTTCTTTGGGTTGGGGGT
TCTTGCAGAGTATCATTTTTTCATTAATCCTTAGACAATATGCAATACAGGGCATAAGTGAAACTACATTTGTCTTGCAA
ACATCTATTGCTTTAGTTACTGGGTCAATGTTAGTGATGTGGTTTAGTGAAATTATTACAGAGAAAGGTATTGGACAAGG
AGCTTCATTGGTAATATTTTTGAATATTGTTTCGACTTTGCCAAAGGCTCTAAGTTCAACAATCGAAAAGGCTCAAACTG
GTGATAGAGGAGACGTTTTAGGTATAGCAGTTTTACTTGGAGTTTTTTTACTTACAATTGTTGGGATAATTTTTGTCCAA
GAGGGTGCGAGACGTATTCCTATCGTTAGTGCAAAAAGGCAAATAGGAAATGCAACATTACTTCCTACAAGGCAAAGTTA
TTTACCTTTAAAATTAAATGCAGGTGGAGTCATGCCTATTATCTTTGCATCTGCTTTAATTTTTTTACCAATCACTATTG
CAAATGTAACTGGTAATCCATTCTTAATAAAAATAGCTAGTAGTTTAAATCCTGGATCCTCAAATCCATGGCCATATGCT
CTTACATTCTTCGCCTTGATTTTGGGATTCTCCTTTTTTTATGCATCCCTTACGATTAATCCAGTGGATGTGGCATCAAA
CCTAAAGAAAGGAGGAGTAGCAATACCAGGGGTTAGACCTGGAAGTAATACAGCAAACTACTTATCAGGGATACAAAATA
GGTTGACATTATTAGGAGGATTATTTCTGGGATCAGTAGCTATAATCCCAGCTGCAGTAGAAAGAGCGACAAATGTCCAG
ACTTTTCAAGGTTTAGGAGCAACTTCATTACTCATCCTCGTGGGTGTTGCTATTGATACTGCTAAGCAAATTCAGACTTA
TGTTATTTCCCAAAGGTATGAGGGACTAATTAACAATTAA

Upstream 100 bases:

>100_bases
ATTCACAAAAGTTGCAAAGCAAAAAATTGAGGACGCAGGTGGATCTTGCGAGCTTCTAAATAATAAATAAATTTACTAGA
AAATTTAGGTAAGCTTCAAA

Downstream 100 bases:

>100_bases
TGAAAAAACATTTACTATTTTTAGGAGCCCCTGGCGCAGGGAAAGGGACTCAGGCGGAATTATTAAGTAAAACCAATTCT
TACTTGCACCTTTCCACAGG

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MFVNKSRNPSASEILSQLFLNKELRSRVLTTLGLLLLVRLGIYIPMPGIDRVAFKSFIDQGGQLIGFLDIFTGGGISTLG
IFALGILPFINASIIIQLLTASLPVLEDLQKNEGEAGRRKIAQITRYVSLGWGFLQSIIFSLILRQYAIQGISETTFVLQ
TSIALVTGSMLVMWFSEIITEKGIGQGASLVIFLNIVSTLPKALSSTIEKAQTGDRGDVLGIAVLLGVFLLTIVGIIFVQ
EGARRIPIVSAKRQIGNATLLPTRQSYLPLKLNAGGVMPIIFASALIFLPITIANVTGNPFLIKIASSLNPGSSNPWPYA
LTFFALILGFSFFYASLTINPVDVASNLKKGGVAIPGVRPGSNTANYLSGIQNRLTLLGGLFLGSVAIIPAAVERATNVQ
TFQGLGATSLLILVGVAIDTAKQIQTYVISQRYEGLINN

Sequences:

>Translated_439_residues
MFVNKSRNPSASEILSQLFLNKELRSRVLTTLGLLLLVRLGIYIPMPGIDRVAFKSFIDQGGQLIGFLDIFTGGGISTLG
IFALGILPFINASIIIQLLTASLPVLEDLQKNEGEAGRRKIAQITRYVSLGWGFLQSIIFSLILRQYAIQGISETTFVLQ
TSIALVTGSMLVMWFSEIITEKGIGQGASLVIFLNIVSTLPKALSSTIEKAQTGDRGDVLGIAVLLGVFLLTIVGIIFVQ
EGARRIPIVSAKRQIGNATLLPTRQSYLPLKLNAGGVMPIIFASALIFLPITIANVTGNPFLIKIASSLNPGSSNPWPYA
LTFFALILGFSFFYASLTINPVDVASNLKKGGVAIPGVRPGSNTANYLSGIQNRLTLLGGLFLGSVAIIPAAVERATNVQ
TFQGLGATSLLILVGVAIDTAKQIQTYVISQRYEGLINN
>Mature_439_residues
MFVNKSRNPSASEILSQLFLNKELRSRVLTTLGLLLLVRLGIYIPMPGIDRVAFKSFIDQGGQLIGFLDIFTGGGISTLG
IFALGILPFINASIIIQLLTASLPVLEDLQKNEGEAGRRKIAQITRYVSLGWGFLQSIIFSLILRQYAIQGISETTFVLQ
TSIALVTGSMLVMWFSEIITEKGIGQGASLVIFLNIVSTLPKALSSTIEKAQTGDRGDVLGIAVLLGVFLLTIVGIIFVQ
EGARRIPIVSAKRQIGNATLLPTRQSYLPLKLNAGGVMPIIFASALIFLPITIANVTGNPFLIKIASSLNPGSSNPWPYA
LTFFALILGFSFFYASLTINPVDVASNLKKGGVAIPGVRPGSNTANYLSGIQNRLTLLGGLFLGSVAIIPAAVERATNVQ
TFQGLGATSLLILVGVAIDTAKQIQTYVISQRYEGLINN

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=426, Percent_Identity=41.0798122065728, Blast_Score=266, Evalue=2e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 46969; Mature: 46969

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1420358 [H]