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The map label for this gene is yqxC [H]

Identifier: 78779941

GI number: 78779941

Start: 1448693

End: 1449505

Strand: Reverse

Name: yqxC [H]

Synonym: PMT9312_1557

Alternate gene names: 78779941

Gene position: 1449505-1448693 (Counterclockwise)

Preceding gene: 78779944

Following gene: 78779938

Centisome position: 84.81

GC content: 31.49

Gene sequence:

>813_bases
ATGATTAAAAAAAGTAGATTAGACCTTTATCTTCTAAATAAAGGTTTATGTGAAACTCGTCAAAAAGCCCAAGGTTTAAT
TCTTGCGGGCAAAGTTAGAGATATAAATGGAAAAGTATTGGATAAACCTGGACAACAAGTATTAATTGGATCTGAATTTT
TTATTGATTCCGAACCTATGTTTGTATCAAGGGGCGGCGAAAAATTATTGGAGGCATTTAAAAAACTTGAAATTAAAGTA
AAAGATAAAATATGTCTTGACGCAGGAATCTCTACTGGGGGATTTACTGATTGCTTATTGCAACAAGGAGCAAAGTTAGT
TTATGGGATAGATGTTGGTTATGGACAGACTGCATGGAAGATTAGAAATAACCCAAAAGTCATACTTTTTGAACGAACTA
ATATTCGAAAATTAAAACCTAATGATCTTTTATCTAGAAGTAATGAATTACCAAATTTTGTGGTTGCTGATTTATCTTTT
ATTTCATTAAAGTTAGTTTTTAAATCTATTGGTAATTTATTAGAAGGTGATTGTATTGAGGGAATATTTTTAATTAAACC
CCAATTTGAGGTGGGTAAAGATAAAGTCAGTAAAGGTGGTGTTGTTCGCAATCCTAAATTTCACACTGAGGCTATAGAGG
CTGTTATTTATGCTGCTGAGAATTTCCAATGGAATATTAAGAATTTGATAGCTTCTCCGCTGGTAGGTCCTGCTGGAAAT
CATGAATATCTAGCTTGGATGTGTTTAAGAAGTGAATCAAATCCAAGAATTAATAGTGAATATATACAAAATTTAGTAAA
AGAAACTCTTTGA

Upstream 100 bases:

>100_bases
GGTAAATTTTTAGTTCTAATTTAAAATTGGAAGGTATTAAAGAATCTGGATCTTAATCTTGTAGAAATTCATTATTCAGT
CTTTTTTTATTGAGTAATAG

Downstream 100 bases:

>100_bases
ATTAAAGAGCTTCTTCATCTTTGTCACCAGTTCTAATTCTCACAACAGAATCAATTGATGTGATGAATATTTTTCCGTCA
CCTATCTCTCCAGTTTTTGC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MIKKSRLDLYLLNKGLCETRQKAQGLILAGKVRDINGKVLDKPGQQVLIGSEFFIDSEPMFVSRGGEKLLEAFKKLEIKV
KDKICLDAGISTGGFTDCLLQQGAKLVYGIDVGYGQTAWKIRNNPKVILFERTNIRKLKPNDLLSRSNELPNFVVADLSF
ISLKLVFKSIGNLLEGDCIEGIFLIKPQFEVGKDKVSKGGVVRNPKFHTEAIEAVIYAAENFQWNIKNLIASPLVGPAGN
HEYLAWMCLRSESNPRINSEYIQNLVKETL

Sequences:

>Translated_270_residues
MIKKSRLDLYLLNKGLCETRQKAQGLILAGKVRDINGKVLDKPGQQVLIGSEFFIDSEPMFVSRGGEKLLEAFKKLEIKV
KDKICLDAGISTGGFTDCLLQQGAKLVYGIDVGYGQTAWKIRNNPKVILFERTNIRKLKPNDLLSRSNELPNFVVADLSF
ISLKLVFKSIGNLLEGDCIEGIFLIKPQFEVGKDKVSKGGVVRNPKFHTEAIEAVIYAAENFQWNIKNLIASPLVGPAGN
HEYLAWMCLRSESNPRINSEYIQNLVKETL
>Mature_270_residues
MIKKSRLDLYLLNKGLCETRQKAQGLILAGKVRDINGKVLDKPGQQVLIGSEFFIDSEPMFVSRGGEKLLEAFKKLEIKV
KDKICLDAGISTGGFTDCLLQQGAKLVYGIDVGYGQTAWKIRNNPKVILFERTNIRKLKPNDLLSRSNELPNFVVADLSF
ISLKLVFKSIGNLLEGDCIEGIFLIKPQFEVGKDKVSKGGVVRNPKFHTEAIEAVIYAAENFQWNIKNLIASPLVGPAGN
HEYLAWMCLRSESNPRINSEYIQNLVKETL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30172; Mature: 30172

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKSRLDLYLLNKGLCETRQKAQGLILAGKVRDINGKVLDKPGQQVLIGSEFFIDSEPM
CCCCCCCCEEEECCCHHHHHHHHCCEEEEEEEEECCCEEECCCCCEEEECCEEEECCCCE
FVSRGGEKLLEAFKKLEIKVKDKICLDAGISTGGFTDCLLQQGAKLVYGIDVGYGQTAWK
EEECCCHHHHHHHHHCEEEECCEEEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCEEEE
IRNNPKVILFERTNIRKLKPNDLLSRSNELPNFVVADLSFISLKLVFKSIGNLLEGDCIE
ECCCCEEEEEECCCCCEECCHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC
GIFLIKPQFEVGKDKVSKGGVVRNPKFHTEAIEAVIYAAENFQWNIKNLIASPLVGPAGN
CEEEECCCHHCCCHHHCCCCEECCCCHHHHHHHHHHHHHCCCEEEHHHHHHCCCCCCCCC
HEYLAWMCLRSESNPRINSEYIQNLVKETL
CCEEEEEEEECCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MIKKSRLDLYLLNKGLCETRQKAQGLILAGKVRDINGKVLDKPGQQVLIGSEFFIDSEPM
CCCCCCCCEEEECCCHHHHHHHHCCEEEEEEEEECCCEEECCCCCEEEECCEEEECCCCE
FVSRGGEKLLEAFKKLEIKVKDKICLDAGISTGGFTDCLLQQGAKLVYGIDVGYGQTAWK
EEECCCHHHHHHHHHCEEEECCEEEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCEEEE
IRNNPKVILFERTNIRKLKPNDLLSRSNELPNFVVADLSFISLKLVFKSIGNLLEGDCIE
ECCCCEEEEEECCCCCEECCHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC
GIFLIKPQFEVGKDKVSKGGVVRNPKFHTEAIEAVIYAAENFQWNIKNLIASPLVGPAGN
CEEEECCCHHCCCHHHCCCCEECCCCHHHHHHHHHHHHHCCCEEEHHHHHHCCCCCCCCC
HEYLAWMCLRSESNPRINSEYIQNLVKETL
CCEEEEEEEECCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]