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The map label for this gene is 78779917

Identifier: 78779917

GI number: 78779917

Start: 1429922

End: 1430398

Strand: Reverse

Name: 78779917

Synonym: PMT9312_1533

Alternate gene names: NA

Gene position: 1430398-1429922 (Counterclockwise)

Preceding gene: 78779918

Following gene: 78779914

Centisome position: 83.69

GC content: 35.22

Gene sequence:

>477_bases
ATGTCTTCATCAGATAAATTAAATCAAAACTCAACAGAAAAAACAGCAAAAAACAGTGATGATTCAAATTCTAAAAATTC
TTCTCCTAATTCAGGAATGATGGGTGCTACAGCTGTAATGGCTGCGGCTACAATTGATGAAGATGGAGTACCTACTGGTT
ATACCCCTAAACCCGATGAAGGAAGATTCATTATTAAAGTATTATGGTTACCTGATAATGTTGCTTTGGCTGTTGATCAA
ATAGTAGGGGGAGGCCCAAGCCCTCTCACTGCTTATAATTTTTGGCCAAGAGATGATGCTTGGGAAAAATTAAAAAGCGA
ATTAGAGAATAAAGGGTGGATTACAGATAATGAGAGAGTTGAAATATTGAATAAAGCGACAGAAGTAATTAATTATTGGC
AAGAAGAGGGTAAAACTAAAAAATTAGAAGAAGCCAAGCTAAAGTTTCCTGAAGTAACTTTTTGTGGAACTGCATAA

Upstream 100 bases:

>100_bases
TGTCTAAATATTTTCAATAATTAAAATCAAGAAATTTTGAATAAATAAATCAAAATGTGACCATAAACTGATAAATTAAT
TATTGAACATAAAAAAGTGA

Downstream 100 bases:

>100_bases
AAATTAGTTTTTTGCAGCTTGTATTCTAGCCTCAGCCTTTGAAATCTCCTGAAGGGCTTTGATTTTCTCTGAATTTTTTT
CATTTTCAGGAAATTTAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: Ycf65-like protein [H]

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSSSDKLNQNSTEKTAKNSDDSNSKNSSPNSGMMGATAVMAAATIDEDGVPTGYTPKPDEGRFIIKVLWLPDNVALAVDQ
IVGGGPSPLTAYNFWPRDDAWEKLKSELENKGWITDNERVEILNKATEVINYWQEEGKTKKLEEAKLKFPEVTFCGTA

Sequences:

>Translated_158_residues
MSSSDKLNQNSTEKTAKNSDDSNSKNSSPNSGMMGATAVMAAATIDEDGVPTGYTPKPDEGRFIIKVLWLPDNVALAVDQ
IVGGGPSPLTAYNFWPRDDAWEKLKSELENKGWITDNERVEILNKATEVINYWQEEGKTKKLEEAKLKFPEVTFCGTA
>Mature_157_residues
SSSDKLNQNSTEKTAKNSDDSNSKNSSPNSGMMGATAVMAAATIDEDGVPTGYTPKPDEGRFIIKVLWLPDNVALAVDQI
VGGGPSPLTAYNFWPRDDAWEKLKSELENKGWITDNERVEILNKATEVINYWQEEGKTKKLEEAKLKFPEVTFCGTA

Specific function: Probably a ribosomal protein or a ribosome-associated protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PSRP3/ycf65 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006924
- ProDom:   PD015453 [H]

Pfam domain/function: PF04839 PSRP-3_Ycf65 [H]

EC number: NA

Molecular weight: Translated: 17373; Mature: 17242

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSDKLNQNSTEKTAKNSDDSNSKNSSPNSGMMGATAVMAAATIDEDGVPTGYTPKPDE
CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
GRFIIKVLWLPDNVALAVDQIVGGGPSPLTAYNFWPRDDAWEKLKSELENKGWITDNERV
CCEEEEEEECCCCHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCHHH
EILNKATEVINYWQEEGKTKKLEEAKLKFPEVTFCGTA
HHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEECCCC
>Mature Secondary Structure 
SSSDKLNQNSTEKTAKNSDDSNSKNSSPNSGMMGATAVMAAATIDEDGVPTGYTPKPDE
CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
GRFIIKVLWLPDNVALAVDQIVGGGPSPLTAYNFWPRDDAWEKLKSELENKGWITDNERV
CCEEEEEEECCCCHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCHHH
EILNKATEVINYWQEEGKTKKLEEAKLKFPEVTFCGTA
HHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917642 [H]