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The map label for this gene is rbpD [H]

Identifier: 78779883

GI number: 78779883

Start: 1407588

End: 1407890

Strand: Direct

Name: rbpD [H]

Synonym: PMT9312_1499

Alternate gene names: 78779883

Gene position: 1407588-1407890 (Clockwise)

Preceding gene: 78779882

Following gene: 78779884

Centisome position: 82.35

GC content: 32.34

Gene sequence:

>303_bases
ATGACTATTTTTATTGGAAATCTATCTTGGGAAACTGAAGTTGAAGATCTTGAACAACTTTTTAGTAATTATGGGGTGGT
AAAGAAATGTTATTTACCTCTTGATAGAGAAACAGGTAGAAAAAGAGGTTTTGCTTTTTTAGATTTAAATAACCAAAATT
CCGAAAAAAAAGCTATAGATGACCTTCAAGATGTTGAATGGATGGGGAGAGAGATAAGGGTGAACGAGGCTGAGAAAAGA
AAAGGGCCCAATAATAAAAAACGCAATAAGTCTTATAGCAATAATAGGAACTTGAATGCATAA

Upstream 100 bases:

>100_bases
GAATCAAAAGTTAGAATAGGAACAATGGAAGCATTTGATTGGAGATAACTTCACTAGTCCAAGGCAACTATTTGTACATT
CACTGAAAGGCTAAAAAGAA

Downstream 100 bases:

>100_bases
TAAATTCATATCTGAAAAAGTTATCCAAACTTTATTTAATAATGACTTTTGTTTTTAGAAATATAAAAATTCTTTCTTTA
TTCTTTTTTTATATCACTAA

Product: RNA-binding region RNP-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MTIFIGNLSWETEVEDLEQLFSNYGVVKKCYLPLDRETGRKRGFAFLDLNNQNSEKKAIDDLQDVEWMGREIRVNEAEKR
KGPNNKKRNKSYSNNRNLNA

Sequences:

>Translated_100_residues
MTIFIGNLSWETEVEDLEQLFSNYGVVKKCYLPLDRETGRKRGFAFLDLNNQNSEKKAIDDLQDVEWMGREIRVNEAEKR
KGPNNKKRNKSYSNNRNLNA
>Mature_99_residues
TIFIGNLSWETEVEDLEQLFSNYGVVKKCYLPLDRETGRKRGFAFLDLNNQNSEKKAIDDLQDVEWMGREIRVNEAEKRK
GPNNKKRNKSYSNNRNLNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=90, Percent_Identity=36.6666666666667, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=37.5, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17508585, Length=79, Percent_Identity=36.7088607594937, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508567, Length=79, Percent_Identity=34.1772151898734, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11741; Mature: 11610

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIFIGNLSWETEVEDLEQLFSNYGVVKKCYLPLDRETGRKRGFAFLDLNNQNSEKKAID
CEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHH
DLQDVEWMGREIRVNEAEKRKGPNNKKRNKSYSNNRNLNA
HHHHHHHCCCEEECCCHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TIFIGNLSWETEVEDLEQLFSNYGVVKKCYLPLDRETGRKRGFAFLDLNNQNSEKKAID
EEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHH
DLQDVEWMGREIRVNEAEKRKGPNNKKRNKSYSNNRNLNA
HHHHHHHCCCEEECCCHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]