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The map label for this gene is ybiX [C]

Identifier: 78779645

GI number: 78779645

Start: 1175026

End: 1175691

Strand: Direct

Name: ybiX [C]

Synonym: PMT9312_1262

Alternate gene names: 78779645

Gene position: 1175026-1175691 (Clockwise)

Preceding gene: 78779643

Following gene: 78779646

Centisome position: 68.75

GC content: 30.18

Gene sequence:

>666_bases
ATGAATTTTTTAACTAACCAGCTTCTCATTCAAGAAGAAATAGAAGCATTAATTAAAAATTTAAACAAAGAAAATACTCT
CTGGGAAGATGGAAAAAAAACTGCCGGCAGTCACGCCTCAATGGTAAAAAATAATTTGCAATTAAATAGAGAATCCGAAA
TATCTAAAAAACTCTCCCATTTAATCAAAAAGAAAATTCTTTCCAGCCCTCTAATAAAAAGCTTTGCCTTACCAAAAATA
ATTCATGGAATAATGTTTACGAAATCATTAAAAGATATGCAATACGGTAGGCATATTGATAATCCATTTATGTCATCAGG
ACGTGCTGATTTATCTTTTACCATTTCTTTAACTGATAAAAATACATACGATGGGGGAGAACTCATTATTGAAGAGATGA
ATTCAGAAAAAGAATTCAAACTAAATGCAGGTGAGATAATTATTTATCCTAGTACTTACTTACATTCAGTTAAAGAGATT
AAAAATGGAGAAAGATTAGTATGTGTAGGTTGGATTGAAAGTTATGTAAAATCAATCGAACAAAGAGAATATTTATTTGA
TCTGGATGCAGGTGCAAAAGGCTTATTAGCTAAAAATGGGAGGTCAGATGAATTGGATCTTATTTTCAAGTCTTATTCAA
ATCTTCTTAGGCTACTTGGTAACTAA

Upstream 100 bases:

>100_bases
TTTTCAAATAGTATCTATGGTTACTTTATATATATTAAAAGAACAAGAATCCTAAAAGATATTTTCTATACACCACCTTG
TATCATTTTTTATAATCAAA

Downstream 100 bases:

>100_bases
AGAATCATTTTATACACTAAATAGAAAATTGTTTAAAAAATATTTAAAATAAAAAATAATTAGAAATTTGGAATGCCAAA
AAAAAGTTCGATAGCATTAT

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MNFLTNQLLIQEEIEALIKNLNKENTLWEDGKKTAGSHASMVKNNLQLNRESEISKKLSHLIKKKILSSPLIKSFALPKI
IHGIMFTKSLKDMQYGRHIDNPFMSSGRADLSFTISLTDKNTYDGGELIIEEMNSEKEFKLNAGEIIIYPSTYLHSVKEI
KNGERLVCVGWIESYVKSIEQREYLFDLDAGAKGLLAKNGRSDELDLIFKSYSNLLRLLGN

Sequences:

>Translated_221_residues
MNFLTNQLLIQEEIEALIKNLNKENTLWEDGKKTAGSHASMVKNNLQLNRESEISKKLSHLIKKKILSSPLIKSFALPKI
IHGIMFTKSLKDMQYGRHIDNPFMSSGRADLSFTISLTDKNTYDGGELIIEEMNSEKEFKLNAGEIIIYPSTYLHSVKEI
KNGERLVCVGWIESYVKSIEQREYLFDLDAGAKGLLAKNGRSDELDLIFKSYSNLLRLLGN
>Mature_221_residues
MNFLTNQLLIQEEIEALIKNLNKENTLWEDGKKTAGSHASMVKNNLQLNRESEISKKLSHLIKKKILSSPLIKSFALPKI
IHGIMFTKSLKDMQYGRHIDNPFMSSGRADLSFTISLTDKNTYDGGELIIEEMNSEKEFKLNAGEIIIYPSTYLHSVKEI
KNGERLVCVGWIESYVKSIEQREYLFDLDAGAKGLLAKNGRSDELDLIFKSYSNLLRLLGN

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=199, Percent_Identity=32.6633165829146, Blast_Score=127, Evalue=8e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1262_PROM9 (Q319X4)

Other databases:

- EMBL:   CP000111
- RefSeq:   YP_397757.1
- ProteinModelPortal:   Q319X4
- STRING:   Q319X4
- GeneID:   3766070
- GenomeReviews:   CP000111_GR
- KEGG:   pmi:PMT9312_1262
- eggNOG:   COG3128
- HOGENOM:   HBG285605
- OMA:   ADWADGK
- ProtClustDB:   PRK05467
- BioCyc:   PMAR74546:PMT9312_1262-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: NA

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25129; Mature: 25129

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 165-165

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFLTNQLLIQEEIEALIKNLNKENTLWEDGKKTAGSHASMVKNNLQLNRESEISKKLSH
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
LIKKKILSSPLIKSFALPKIIHGIMFTKSLKDMQYGRHIDNPFMSSGRADLSFTISLTDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEEECCC
NTYDGGELIIEEMNSEKEFKLNAGEIIIYPSTYLHSVKEIKNGERLVCVGWIESYVKSIE
CCCCCHHHHHHHCCCCCCEEECCCCEEEECHHHHHHHHHHCCCCEEEEEHHHHHHHHHHH
QREYLFDLDAGAKGLLAKNGRSDELDLIFKSYSNLLRLLGN
HHHHHEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNFLTNQLLIQEEIEALIKNLNKENTLWEDGKKTAGSHASMVKNNLQLNRESEISKKLSH
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
LIKKKILSSPLIKSFALPKIIHGIMFTKSLKDMQYGRHIDNPFMSSGRADLSFTISLTDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEEECCC
NTYDGGELIIEEMNSEKEFKLNAGEIIIYPSTYLHSVKEIKNGERLVCVGWIESYVKSIE
CCCCCHHHHHHHCCCCCCEEECCCCEEEECHHHHHHHHHHCCCCEEEEEHHHHHHHHHHH
QREYLFDLDAGAKGLLAKNGRSDELDLIFKSYSNLLRLLGN
HHHHHEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA