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The map label for this gene is recD [H]

Identifier: 78779496

GI number: 78779496

Start: 1026281

End: 1027981

Strand: Reverse

Name: recD [H]

Synonym: PMT9312_1113

Alternate gene names: 78779496

Gene position: 1027981-1026281 (Counterclockwise)

Preceding gene: 78779497

Following gene: 78779495

Centisome position: 60.14

GC content: 24.28

Gene sequence:

>1701_bases
ATGACTAAAACTACTACGGATATTGAAAAGTTCGAATATTATCATATATTTAATTTAATCTTAGGTATTTTCAAATTCAA
TGAAAAAAAATATGGAAATTTCGTAAAAGATGCAATAAGAATTTTATTAGAGGTTGAAAAAAATGGTGAAACTATTATTG
ATGTAGATAATAGTTTAATAATCTTTGAATTTTTTGAAGATGGCTGGCCTAATAAACATATAGATGTTCTAAAAAATATA
GGCTTGATAGGTTCCCTTAATTCTCCATTCGTATTAGTAAATAGAAAATTATCCCTATCAAAATGGTCAAAAAAGATAGA
AAGAGTTATGAATTTATTTTTAAAAAAAATAGATACCGATAATTTAATGAACCCGATAATTTATAAAGATGATAATAAAA
TTGATCAAATTAAAAATATATTTAAATATTCAAACTTAGTTTTCCTTCAAGGAGGACCAGGTACGGGTAAAACCACTTTA
ATAATAAACTTAATACTAGAACTCCTTCGAATGGATAACTTTTTAAATATTGGTTTGTCTGCTCCAACAGGTAAAGCTAC
AGCTCGTCTAAAAGAAGCTCTTAATGATAAAAATATTTCCTTTAGCAAATTTCTAGACCAAATAGAATTTCAAACTTTAC
ATAGATGGATTTTAAATTCTCAAAATAAATCTCTTAAGTTGAAATTTAAACTAAAAGAACTTGATATTTTTATAATTGAT
GAAATGTCAATGGTTAATATTGATTTGATTGAATCAGTTTTAAGTTTGCTAGCAAAGGACTGTAAAATTATTTTAGTTGG
AGATAAAAATCAATTGTCTCCAGTAAATAACTGTTCTATCTGGAATTATTTGTTTGAATATGGTGAAAATAGTTCAATTA
AATCATCTGTAGTAAATTTAGAAAAAACTTATAGAAATATTGGAGATATAGCATTAATTAGTAGTTTAATATTTAATAAT
GATTGTTCCTTACTTAATCAAAAGATAAAAGAATTAGAAAAAGATAACAATTCAAAAGAAGTTACTATTTCAAAAAGTAC
AGAAAAAGATATTCCAAAAGATCTATTTTTTTCTATTACAAGTCATCTAAATAAGTTAAATCTTTCAACTTCAAATTTAA
GTAAAAAAAAATATATATTTGATGAGGGTATTGATAATTTATTGCTTAATGAAAAAGATTTAGTAGATAAGATATTTCTG
GATTTACAAAGTTACTTGATTTTATGTGAAAAAAATTCTGGAATATGGAGTGTTGAATATTTGAATGAAATTGTTTTTGG
TCAAAAAAAACCATATGACCTTAAAACTCTTAACGAGGGTGTTCCGATAATGTGTACAAAAAATAATATTGAACTTGGAT
TGTCAAATGGTGATATCGGAGTAATTATAGGTTTAAAAAATAAAAGAAAATATCTTTTTAGAAAATTTAATGATAATAAC
GAAGAAATTGTCGCATTAATTGATCCATCTAATTTAGAAAATGTTGTGCCAGCAATAGCCATTACTATTCATAAATCTCA
AGGAAGTGAATCTGAGAAAGTAAGCATTTTGTGGTCACAAAAATATAGAAGAAATCAATATGCTGTAAAAGAAAAGAAAG
ATAATGAAAATATCTTTTGCAGAGATAATTTTGAAAGAAGGTTACTTTATACTGCTGTTACAAGAGCGAAAAAGTTTCTA
AATATATATTATTTAAATTAA

Upstream 100 bases:

>100_bases
GAATTATTTGAAAAATCTAAGTCGAAAGATATATCGCCAGGTATTTTTATTGGCAAAGCACCTTTAAAGAGAATTAATTA
TTTAGATAACCTTTTTTAGA

Downstream 100 bases:

>100_bases
ATCTTATTTTTGAGAAATTAGTAAGATTTTAACCTCAAGATGTTAGATTAATGACTCGGCTCTGCAAGGCTAGTCAACAA
TTTAAGTAAATTTAGATATT

Product: DNA helicase/exodeoxyribonuclease V, alpha subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 566; Mature: 565

Protein sequence:

>566_residues
MTKTTTDIEKFEYYHIFNLILGIFKFNEKKYGNFVKDAIRILLEVEKNGETIIDVDNSLIIFEFFEDGWPNKHIDVLKNI
GLIGSLNSPFVLVNRKLSLSKWSKKIERVMNLFLKKIDTDNLMNPIIYKDDNKIDQIKNIFKYSNLVFLQGGPGTGKTTL
IINLILELLRMDNFLNIGLSAPTGKATARLKEALNDKNISFSKFLDQIEFQTLHRWILNSQNKSLKLKFKLKELDIFIID
EMSMVNIDLIESVLSLLAKDCKIILVGDKNQLSPVNNCSIWNYLFEYGENSSIKSSVVNLEKTYRNIGDIALISSLIFNN
DCSLLNQKIKELEKDNNSKEVTISKSTEKDIPKDLFFSITSHLNKLNLSTSNLSKKKYIFDEGIDNLLLNEKDLVDKIFL
DLQSYLILCEKNSGIWSVEYLNEIVFGQKKPYDLKTLNEGVPIMCTKNNIELGLSNGDIGVIIGLKNKRKYLFRKFNDNN
EEIVALIDPSNLENVVPAIAITIHKSQGSESEKVSILWSQKYRRNQYAVKEKKDNENIFCRDNFERRLLYTAVTRAKKFL
NIYYLN

Sequences:

>Translated_566_residues
MTKTTTDIEKFEYYHIFNLILGIFKFNEKKYGNFVKDAIRILLEVEKNGETIIDVDNSLIIFEFFEDGWPNKHIDVLKNI
GLIGSLNSPFVLVNRKLSLSKWSKKIERVMNLFLKKIDTDNLMNPIIYKDDNKIDQIKNIFKYSNLVFLQGGPGTGKTTL
IINLILELLRMDNFLNIGLSAPTGKATARLKEALNDKNISFSKFLDQIEFQTLHRWILNSQNKSLKLKFKLKELDIFIID
EMSMVNIDLIESVLSLLAKDCKIILVGDKNQLSPVNNCSIWNYLFEYGENSSIKSSVVNLEKTYRNIGDIALISSLIFNN
DCSLLNQKIKELEKDNNSKEVTISKSTEKDIPKDLFFSITSHLNKLNLSTSNLSKKKYIFDEGIDNLLLNEKDLVDKIFL
DLQSYLILCEKNSGIWSVEYLNEIVFGQKKPYDLKTLNEGVPIMCTKNNIELGLSNGDIGVIIGLKNKRKYLFRKFNDNN
EEIVALIDPSNLENVVPAIAITIHKSQGSESEKVSILWSQKYRRNQYAVKEKKDNENIFCRDNFERRLLYTAVTRAKKFL
NIYYLN
>Mature_565_residues
TKTTTDIEKFEYYHIFNLILGIFKFNEKKYGNFVKDAIRILLEVEKNGETIIDVDNSLIIFEFFEDGWPNKHIDVLKNIG
LIGSLNSPFVLVNRKLSLSKWSKKIERVMNLFLKKIDTDNLMNPIIYKDDNKIDQIKNIFKYSNLVFLQGGPGTGKTTLI
INLILELLRMDNFLNIGLSAPTGKATARLKEALNDKNISFSKFLDQIEFQTLHRWILNSQNKSLKLKFKLKELDIFIIDE
MSMVNIDLIESVLSLLAKDCKIILVGDKNQLSPVNNCSIWNYLFEYGENSSIKSSVVNLEKTYRNIGDIALISSLIFNND
CSLLNQKIKELEKDNNSKEVTISKSTEKDIPKDLFFSITSHLNKLNLSTSNLSKKKYIFDEGIDNLLLNEKDLVDKIFLD
LQSYLILCEKNSGIWSVEYLNEIVFGQKKPYDLKTLNEGVPIMCTKNNIELGLSNGDIGVIIGLKNKRKYLFRKFNDNNE
EIVALIDPSNLENVVPAIAITIHKSQGSESEKVSILWSQKYRRNQYAVKEKKDNENIFCRDNFERRLLYTAVTRAKKFLN
IYYLN

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=447, Percent_Identity=26.1744966442953, Blast_Score=122, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 65315; Mature: 65184

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTTTDIEKFEYYHIFNLILGIFKFNEKKYGNFVKDAIRILLEVEKNGETIIDVDNSLI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHEEEECCCCCEEEEECCCEE
IFEFFEDGWPNKHIDVLKNIGLIGSLNSPFVLVNRKLSLSKWSKKIERVMNLFLKKIDTD
EEEEECCCCCCCHHHHHHCCCCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
NLMNPIIYKDDNKIDQIKNIFKYSNLVFLQGGPGTGKTTLIINLILELLRMDNFLNIGLS
CCCCCCEECCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCC
APTGKATARLKEALNDKNISFSKFLDQIEFQTLHRWILNSQNKSLKLKFKLKELDIFIID
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEEEC
EMSMVNIDLIESVLSLLAKDCKIILVGDKNQLSPVNNCSIWNYLFEYGENSSIKSSVVNL
CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH
EKTYRNIGDIALISSLIFNNDCSLLNQKIKELEKDNNSKEVTISKSTEKDIPKDLFFSIT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHH
SHLNKLNLSTSNLSKKKYIFDEGIDNLLLNEKDLVDKIFLDLQSYLILCEKNSGIWSVEY
HHHHHCCCCCCCCCCCCEEHHCCCHHHHCCCHHHHHHHHHHHHHEEEEEECCCCEEEHHH
LNEIVFGQKKPYDLKTLNEGVPIMCTKNNIELGLSNGDIGVIIGLKNKRKYLFRKFNDNN
HHHHHCCCCCCCCHHHHCCCCCEEEECCCEEEEECCCCEEEEEEECCCCHHHHHHCCCCC
EEIVALIDPSNLENVVPAIAITIHKSQGSESEKVSILWSQKYRRNQYAVKEKKDNENIFC
CEEEEEECCCCCHHHCCEEEEEEECCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCEEE
RDNFERRLLYTAVTRAKKFLNIYYLN
CCCCHHHHHHHHHHHHHHEEEEEEEC
>Mature Secondary Structure 
TKTTTDIEKFEYYHIFNLILGIFKFNEKKYGNFVKDAIRILLEVEKNGETIIDVDNSLI
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHEEEECCCCCEEEEECCCEE
IFEFFEDGWPNKHIDVLKNIGLIGSLNSPFVLVNRKLSLSKWSKKIERVMNLFLKKIDTD
EEEEECCCCCCCHHHHHHCCCCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
NLMNPIIYKDDNKIDQIKNIFKYSNLVFLQGGPGTGKTTLIINLILELLRMDNFLNIGLS
CCCCCCEECCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCC
APTGKATARLKEALNDKNISFSKFLDQIEFQTLHRWILNSQNKSLKLKFKLKELDIFIID
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEEEC
EMSMVNIDLIESVLSLLAKDCKIILVGDKNQLSPVNNCSIWNYLFEYGENSSIKSSVVNL
CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH
EKTYRNIGDIALISSLIFNNDCSLLNQKIKELEKDNNSKEVTISKSTEKDIPKDLFFSIT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHH
SHLNKLNLSTSNLSKKKYIFDEGIDNLLLNEKDLVDKIFLDLQSYLILCEKNSGIWSVEY
HHHHHCCCCCCCCCCCCEEHHCCCHHHHCCCHHHHHHHHHHHHHEEEEEECCCCEEEHHH
LNEIVFGQKKPYDLKTLNEGVPIMCTKNNIELGLSNGDIGVIIGLKNKRKYLFRKFNDNN
HHHHHCCCCCCCCHHHHCCCCCEEEECCCEEEEECCCCEEEEEEECCCCHHHHHHCCCCC
EEIVALIDPSNLENVVPAIAITIHKSQGSESEKVSILWSQKYRRNQYAVKEKKDNENIFC
CEEEEEECCCCCHHHCCEEEEEEECCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCEEE
RDNFERRLLYTAVTRAKKFLNIYYLN
CCCCHHHHHHHHHHHHHHEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]