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The map label for this gene is rlmH [H]

Identifier: 78779248

GI number: 78779248

Start: 799850

End: 800266

Strand: Reverse

Name: rlmH [H]

Synonym: PMT9312_0864

Alternate gene names: 78779248

Gene position: 800266-799850 (Counterclockwise)

Preceding gene: 78779249

Following gene: 78779247

Centisome position: 46.82

GC content: 27.58

Gene sequence:

>417_bases
ATGCTTCAGAGTAATAGATTAGCAATTTATGCTATCGGCAAAATAAAGAAACTTTGGATTAGAGATGGAATTAATCAATA
CAAAAAAAGAATGCCTGAACTTATCATTAATGAGTTAAAGACTTTTAATTTAAATAATCTTAGATCCAATAACAATATTA
TTATCTGCCTAAGTGAAGAAGGGAAACAGTTTAATTCAGTTGAACTATGTTCTTTACTCTTAAACTTTAAAAATAAAAAA
ATAAATTTCTTAATCGGTGATACTGATGGAATTAGTTCAGATATAAAAAAAAATTCAGATCTTATACTAAGTTTGTCTCC
TTTAACCTTTCCTCATGAATTAGCTAGATTAATCCTTATCGAGCAAATCTATAGAGCTATTTCTATATCTAACAACTCCC
CTTACCATCGTTCTTAG

Upstream 100 bases:

>100_bases
TCCAAAAAAGATAATTTTTCCAAGAAATTAACAACCGAAGAGGAACTATATGATGAATTTAATTATCTTCTTGATGAATA
ATTAGTTTTAATATTTACTT

Downstream 100 bases:

>100_bases
AAAGATTTGATTTGATTTTATCTAAAATTAATCTATAAAACATTAACAACCAACTATTTTTTTTGATTTTTTATTATATA
GTACATATATACTATTAATT

Product: hypothetical protein

Products: NA

Alternate protein names: 23S rRNA m3Psi1915 methyltransferase; rRNA (pseudouridine-N3-)-methyltransferase rlmH [H]

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MLQSNRLAIYAIGKIKKLWIRDGINQYKKRMPELIINELKTFNLNNLRSNNNIIICLSEEGKQFNSVELCSLLLNFKNKK
INFLIGDTDGISSDIKKNSDLILSLSPLTFPHELARLILIEQIYRAISISNNSPYHRS

Sequences:

>Translated_138_residues
MLQSNRLAIYAIGKIKKLWIRDGINQYKKRMPELIINELKTFNLNNLRSNNNIIICLSEEGKQFNSVELCSLLLNFKNKK
INFLIGDTDGISSDIKKNSDLILSLSPLTFPHELARLILIEQIYRAISISNNSPYHRS
>Mature_138_residues
MLQSNRLAIYAIGKIKKLWIRDGINQYKKRMPELIINELKTFNLNNLRSNNNIIICLSEEGKQFNSVELCSLLLNFKNKK
INFLIGDTDGISSDIKKNSDLILSLSPLTFPHELARLILIEQIYRAISISNNSPYHRS

Specific function: Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA [H]

COG id: COG1576

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase rlmH family [H]

Homologues:

Organism=Escherichia coli, GI1786855, Length=153, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003742 [H]

Pfam domain/function: PF02590 SPOUT_MTase [H]

EC number: NA

Molecular weight: Translated: 15891; Mature: 15891

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQSNRLAIYAIGKIKKLWIRDGINQYKKRMPELIINELKTFNLNNLRSNNNIIICLSEE
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
GKQFNSVELCSLLLNFKNKKINFLIGDTDGISSDIKKNSDLILSLSPLTFPHELARLILI
CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHH
EQIYRAISISNNSPYHRS
HHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLQSNRLAIYAIGKIKKLWIRDGINQYKKRMPELIINELKTFNLNNLRSNNNIIICLSEE
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
GKQFNSVELCSLLLNFKNKKINFLIGDTDGISSDIKKNSDLILSLSPLTFPHELARLILI
CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHH
EQIYRAISISNNSPYHRS
HHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA