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The map label for this gene is 78778808

Identifier: 78778808

GI number: 78778808

Start: 398786

End: 400276

Strand: Direct

Name: 78778808

Synonym: PMT9312_0423

Alternate gene names: NA

Gene position: 398786-400276 (Clockwise)

Preceding gene: 78778807

Following gene: 78778809

Centisome position: 23.33

GC content: 26.63

Gene sequence:

>1491_bases
ATGAAACAAGTATCAATTATTTTCCCGAATCAACTTTTTAGAGAAAGCCCAATCTTAAAAATAAGTTGTGATATTTTAAT
TTTGGAAGACTCATTATTTTTTGGAAATGATAAATTTCATAAATTAATTAACCATAAAAACAAGTTAGTTTTTCATAGAG
CATCTATGCTCGCTTATAAAAAATATTTAGAAATATCTGGCTTTAAAGTTTTATATATCGAAAACAAGAATAATATTTCT
ACAGTTGACTATTTATCAGAATTTATTAAAGATAAATATCAGAAAATAAATCTCATAGAACCGCATGATTTTTTAATAAT
GAAGAGGATAAATCATTTTGTTGAAAGTAATAATTTAGCTTTAAATGTTTTGCCTTCTCCTATGTTTATGAGCAGTGAAG
ATTTAAAAGAGTTATTTGCATTAAATACAAAAAAACCTCTTATGAGGAGATTTTATGAGAATCAAAGGAAAAGCCAAAAG
ATATTAGTTAATCCGGATGATACACCTGAAGGTGGCAAATGGAGTTTCGATGAAATGAATAGAAAAAAATTACCAAAAAA
AATAACCATACCTGATATACCCAAGTTACTAAAAAATAACTTTGTAGTTTATGCCGAAGAGTCATTAGCTAATTTTGATA
TTGAGTTTATTGGAGAAAGCAATAACTTTTTATATCCGACTAATTTTGATGAGGCAGATGAATGGTTAAATGATTTTTTT
AAACATAGATTTTTTTTATTTGGAGATTACGAAGATGCTATTTCTAAAGAAAATTCTTTTTTATGGCATAGTTTACTTTC
TCCTCTTTTAAATAGTGGTTTATTGACTCCAGATGAAGTTGTAAATAAAGCATTACTTTTTGCCAAAATTAATAATGTTT
CCATTAACTCTTTAGAGGGTTTTATTCGTCAAATTATTGGATGGAGAGAATTTATTTGCCTTGTTTATAAGAAGTATGGA
ACAAAGATGAGAAATAGTAATTTTTGGAATTTTGAAAATAAACCAATTCCAGAATCTTTTTATAAGGGAAATACAGGAAT
TGAACCAGTAGACGTTGTTATAAAAAATATTATTAAATTTGGTTATTGTCATCATATTGAGAGGCTAATGATTATTGGTA
ACTTTATGCTTCTATGTAGAATTCACCCTAATCAAGTTTATAAATGGTTTATGGGAATGTTTATTGATTCTTATGATTGG
GTGATGGTTCCTAATGTTTATGGAATGAGTCAGTTTAGTGACGGAGGTATTTTCTCAACTAAACCATATATATCAAGCTC
TAATTATGTAAAAAAAATGTCAAATTTTAAAAGTGGACCTTGGTGTTCAATATGGGATAGCTTATTTTGGAAATTTATTA
AAGATAATGAAAGTTTTTTTAGAAAGCAATATCGACTGTCTATGTTAACGAGAAATCTTGACAAAATGTCAGATGAAAAA
TTAAATAATCACTTAAGAACAGCTGATAAATTCTTAAGAGATATTCAATAA

Upstream 100 bases:

>100_bases
CTGTTTGCAATAGGCCGTTCGAGTGGCGTAAAAAATGGAAAAACTGTTGGGATGATGTTATTTACTGTTCAAAAAGATGT
AGTAAGAGGAAGTCATAAAG

Downstream 100 bases:

>100_bases
ATTAAGAGTAATATCCTAAAGTTACTTTTGAAAAATTAAAAAAATATTATATTATTACGAAATATTACAGGCCGATGTTA
AATTAAAAAAAAATTAGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: Deoxyribodipyrimidine Photolyase-Like Protein; Photolyase; Deoxyribodipyrimidine Photolyase Family Protein; Deoxyribodipyrimidine Photolyase; Photolyase Protein Family Protein; Deoxyribodipyrimidine Photolyase-Like Protein Protein; Photolyase Family Protein; Cryptochrome/Photolyase; DNA Photolyase; Bcct Transporter; Protein Related Deoxyribodipyrimidine Photolyase; Deoxyribodipyrimidine Photo-Lyase; Cryptochrome/Photolyase-Related; Photolyase Related Protein; BCCT Transporter; Alpha-Deoxyribodipyrimidine Photolyase-Related Protein; Deoxyribodipyrimidine Photolyase Related Protein; A Deoxyribodipyrimidine Photolyase-Like Protein; Deoxyribodipyrimidine Photolyase Homolog

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MKQVSIIFPNQLFRESPILKISCDILILEDSLFFGNDKFHKLINHKNKLVFHRASMLAYKKYLEISGFKVLYIENKNNIS
TVDYLSEFIKDKYQKINLIEPHDFLIMKRINHFVESNNLALNVLPSPMFMSSEDLKELFALNTKKPLMRRFYENQRKSQK
ILVNPDDTPEGGKWSFDEMNRKKLPKKITIPDIPKLLKNNFVVYAEESLANFDIEFIGESNNFLYPTNFDEADEWLNDFF
KHRFFLFGDYEDAISKENSFLWHSLLSPLLNSGLLTPDEVVNKALLFAKINNVSINSLEGFIRQIIGWREFICLVYKKYG
TKMRNSNFWNFENKPIPESFYKGNTGIEPVDVVIKNIIKFGYCHHIERLMIIGNFMLLCRIHPNQVYKWFMGMFIDSYDW
VMVPNVYGMSQFSDGGIFSTKPYISSSNYVKKMSNFKSGPWCSIWDSLFWKFIKDNESFFRKQYRLSMLTRNLDKMSDEK
LNNHLRTADKFLRDIQ

Sequences:

>Translated_496_residues
MKQVSIIFPNQLFRESPILKISCDILILEDSLFFGNDKFHKLINHKNKLVFHRASMLAYKKYLEISGFKVLYIENKNNIS
TVDYLSEFIKDKYQKINLIEPHDFLIMKRINHFVESNNLALNVLPSPMFMSSEDLKELFALNTKKPLMRRFYENQRKSQK
ILVNPDDTPEGGKWSFDEMNRKKLPKKITIPDIPKLLKNNFVVYAEESLANFDIEFIGESNNFLYPTNFDEADEWLNDFF
KHRFFLFGDYEDAISKENSFLWHSLLSPLLNSGLLTPDEVVNKALLFAKINNVSINSLEGFIRQIIGWREFICLVYKKYG
TKMRNSNFWNFENKPIPESFYKGNTGIEPVDVVIKNIIKFGYCHHIERLMIIGNFMLLCRIHPNQVYKWFMGMFIDSYDW
VMVPNVYGMSQFSDGGIFSTKPYISSSNYVKKMSNFKSGPWCSIWDSLFWKFIKDNESFFRKQYRLSMLTRNLDKMSDEK
LNNHLRTADKFLRDIQ
>Mature_496_residues
MKQVSIIFPNQLFRESPILKISCDILILEDSLFFGNDKFHKLINHKNKLVFHRASMLAYKKYLEISGFKVLYIENKNNIS
TVDYLSEFIKDKYQKINLIEPHDFLIMKRINHFVESNNLALNVLPSPMFMSSEDLKELFALNTKKPLMRRFYENQRKSQK
ILVNPDDTPEGGKWSFDEMNRKKLPKKITIPDIPKLLKNNFVVYAEESLANFDIEFIGESNNFLYPTNFDEADEWLNDFF
KHRFFLFGDYEDAISKENSFLWHSLLSPLLNSGLLTPDEVVNKALLFAKINNVSINSLEGFIRQIIGWREFICLVYKKYG
TKMRNSNFWNFENKPIPESFYKGNTGIEPVDVVIKNIIKFGYCHHIERLMIIGNFMLLCRIHPNQVYKWFMGMFIDSYDW
VMVPNVYGMSQFSDGGIFSTKPYISSSNYVKKMSNFKSGPWCSIWDSLFWKFIKDNESFFRKQYRLSMLTRNLDKMSDEK
LNNHLRTADKFLRDIQ

Specific function: Unknown

COG id: COG3046

COG function: function code R; Uncharacterized protein related to deoxyribodipyrimidine photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58703; Mature: 58703

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVSIIFPNQLFRESPILKISCDILILEDSLFFGNDKFHKLINHKNKLVFHRASMLAYK
CCCEEEECCHHHHHCCCCEEEEEEEEEEECCEEECCHHHHHHHCCCCCEEEHHHHHHHHH
KYLEISGFKVLYIENKNNISTVDYLSEFIKDKYQKINLIEPHDFLIMKRINHFVESNNLA
HHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEE
LNVLPSPMFMSSEDLKELFALNTKKPLMRRFYENQRKSQKILVNPDDTPEGGKWSFDEMN
EEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
RKKLPKKITIPDIPKLLKNNFVVYAEESLANFDIEFIGESNNFLYPTNFDEADEWLNDFF
HHHCCCCCCCCCHHHHHHCCEEEEEECCCCCCCEEEEECCCCEECCCCCCHHHHHHHHHH
KHRFFLFGDYEDAISKENSFLWHSLLSPLLNSGLLTPDEVVNKALLFAKINNVSINSLEG
HCCEEEEECHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCHHHHHH
FIRQIIGWREFICLVYKKYGTKMRNSNFWNFENKPIPESFYKGNTGIEPVDVVIKNIIKF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHH
GYCHHIERLMIIGNFMLLCRIHPNQVYKWFMGMFIDSYDWVMVPNVYGMSQFSDGGIFST
HHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEC
KPYISSSNYVKKMSNFKSGPWCSIWDSLFWKFIKDNESFFRKQYRLSMLTRNLDKMSDEK
CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LNNHLRTADKFLRDIQ
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQVSIIFPNQLFRESPILKISCDILILEDSLFFGNDKFHKLINHKNKLVFHRASMLAYK
CCCEEEECCHHHHHCCCCEEEEEEEEEEECCEEECCHHHHHHHCCCCCEEEHHHHHHHHH
KYLEISGFKVLYIENKNNISTVDYLSEFIKDKYQKINLIEPHDFLIMKRINHFVESNNLA
HHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEE
LNVLPSPMFMSSEDLKELFALNTKKPLMRRFYENQRKSQKILVNPDDTPEGGKWSFDEMN
EEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
RKKLPKKITIPDIPKLLKNNFVVYAEESLANFDIEFIGESNNFLYPTNFDEADEWLNDFF
HHHCCCCCCCCCHHHHHHCCEEEEEECCCCCCCEEEEECCCCEECCCCCCHHHHHHHHHH
KHRFFLFGDYEDAISKENSFLWHSLLSPLLNSGLLTPDEVVNKALLFAKINNVSINSLEG
HCCEEEEECHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCHHHHHH
FIRQIIGWREFICLVYKKYGTKMRNSNFWNFENKPIPESFYKGNTGIEPVDVVIKNIIKF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHH
GYCHHIERLMIIGNFMLLCRIHPNQVYKWFMGMFIDSYDWVMVPNVYGMSQFSDGGIFST
HHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEC
KPYISSSNYVKKMSNFKSGPWCSIWDSLFWKFIKDNESFFRKQYRLSMLTRNLDKMSDEK
CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LNNHLRTADKFLRDIQ
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA