Click here to switch to the map view.

The map label for this gene is dppC [H]

Identifier: 78778802

GI number: 78778802

Start: 396030

End: 396851

Strand: Direct

Name: dppC [H]

Synonym: PMT9312_0417

Alternate gene names: 78778802

Gene position: 396030-396851 (Clockwise)

Preceding gene: 78778801

Following gene: 78778804

Centisome position: 23.17

GC content: 34.43

Gene sequence:

>822_bases
GTGGGCACAAATATCAGAAAAGCTGGATTTCTAATTGTACTTTTTTATCTGCTTGTTGTTTTAATAATGAAATTTTTAGA
GGCCAATAATTTTTTTGGTTATTCATTTTCAATGTTAAGCAATGATATCTTTGCCCCTCCTTCGCTTAATCATTTTTGTG
GGACAGATAGATTAGGAAGAGATGTTTGCTTAAGAACTTTGCAAGGATCATCCTTAGCGATAGAAGTTGTATTCTTAGCT
ATTCTTTTTTCATTAAGTTTGGGTTTGCCATTGGGATTATTAAGTGGATATTTTGGTGGTTTTTTTGATAAATGCTTATC
ACTAATAATGGATACTATTTTTTCAATACCTGTAATTTTGCTTTCAGTTGTTGTGGCTTTTGTATTGGGTAAGGGTATCC
TTAACGCAGCTTTGGCATTGTGTATTGTTTACTCTCCTCAATATTTTAGATTAATCAGAAATCAGACAATATTGGTTAAA
TCCGAAACTTATGTGGAGGCAGCTCAAGTTTCAGGAGCTGATGTTAAAACAATTATTTTTAAATATATTCTTCCAAATGT
AATAACACCTTTGCCTATCCTGCTTACCCTAAATGCTGCGGATGCTGTTTTGGTATTGGGAAGTTTAGGATTTTTAGGCC
TTGGTGTTCCTGCAGATGTTCCTGAATGGGGCAGTGATTTAAATCTTGCTCTTGCAGCTTTACCTACAGGTATATGGTGG
ACGGCTTTGTTCCCAGGTTTGGCAATGTTTTTTTTAGTTTTAGGCCTTTCTTTTATAGGGGAGGATCTTGAAGAGATTTT
TGATAGTCAAAATTCCGAATAA

Upstream 100 bases:

>100_bases
TTTTTAATTTTAAATTAACTGCTATTTTTTTTTAAAAGAATTGGGTATATTTCAGTCATATCTGTAAAAAAAGATTTTGG
ATATTAACTCATTTAATCGT

Downstream 100 bases:

>100_bases
ATTTAGTTTTCTTTAATAGGATCAAAATTTCCTTGATCATTCAACGTTGGATATTCTTTAGCTGATTTTTTATAAATAGT
AGCTAATTCTGGGTAACACC

Product: putative ABC transporter, oligopeptides

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MGTNIRKAGFLIVLFYLLVVLIMKFLEANNFFGYSFSMLSNDIFAPPSLNHFCGTDRLGRDVCLRTLQGSSLAIEVVFLA
ILFSLSLGLPLGLLSGYFGGFFDKCLSLIMDTIFSIPVILLSVVVAFVLGKGILNAALALCIVYSPQYFRLIRNQTILVK
SETYVEAAQVSGADVKTIIFKYILPNVITPLPILLTLNAADAVLVLGSLGFLGLGVPADVPEWGSDLNLALAALPTGIWW
TALFPGLAMFFLVLGLSFIGEDLEEIFDSQNSE

Sequences:

>Translated_273_residues
MGTNIRKAGFLIVLFYLLVVLIMKFLEANNFFGYSFSMLSNDIFAPPSLNHFCGTDRLGRDVCLRTLQGSSLAIEVVFLA
ILFSLSLGLPLGLLSGYFGGFFDKCLSLIMDTIFSIPVILLSVVVAFVLGKGILNAALALCIVYSPQYFRLIRNQTILVK
SETYVEAAQVSGADVKTIIFKYILPNVITPLPILLTLNAADAVLVLGSLGFLGLGVPADVPEWGSDLNLALAALPTGIWW
TALFPGLAMFFLVLGLSFIGEDLEEIFDSQNSE
>Mature_272_residues
GTNIRKAGFLIVLFYLLVVLIMKFLEANNFFGYSFSMLSNDIFAPPSLNHFCGTDRLGRDVCLRTLQGSSLAIEVVFLAI
LFSLSLGLPLGLLSGYFGGFFDKCLSLIMDTIFSIPVILLSVVVAFVLGKGILNAALALCIVYSPQYFRLIRNQTILVKS
ETYVEAAQVSGADVKTIIFKYILPNVITPLPILLTLNAADAVLVLGSLGFLGLGVPADVPEWGSDLNLALAALPTGIWWT
ALFPGLAMFFLVLGLSFIGEDLEEIFDSQNSE

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=266, Percent_Identity=33.4586466165414, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1787760, Length=229, Percent_Identity=36.2445414847162, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1789964, Length=240, Percent_Identity=36.25, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1789889, Length=228, Percent_Identity=30.7017543859649, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787549, Length=226, Percent_Identity=31.858407079646, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787498, Length=262, Percent_Identity=28.2442748091603, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788505, Length=252, Percent_Identity=28.1746031746032, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29621; Mature: 29489

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTNIRKAGFLIVLFYLLVVLIMKFLEANNFFGYSFSMLSNDIFAPPSLNHFCGTDRLGR
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHCCCCHHHH
DVCLRTLQGSSLAIEVVFLAILFSLSLGLPLGLLSGYFGGFFDKCLSLIMDTIFSIPVIL
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSVVVAFVLGKGILNAALALCIVYSPQYFRLIRNQTILVKSETYVEAAQVSGADVKTIIF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEECHHHHHHHHCCCCHHHHHHH
KYILPNVITPLPILLTLNAADAVLVLGSLGFLGLGVPADVPEWGSDLNLALAALPTGIWW
HHHHHHHHCCCHHEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHH
TALFPGLAMFFLVLGLSFIGEDLEEIFDSQNSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GTNIRKAGFLIVLFYLLVVLIMKFLEANNFFGYSFSMLSNDIFAPPSLNHFCGTDRLGR
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHCCCCHHHH
DVCLRTLQGSSLAIEVVFLAILFSLSLGLPLGLLSGYFGGFFDKCLSLIMDTIFSIPVIL
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSVVVAFVLGKGILNAALALCIVYSPQYFRLIRNQTILVKSETYVEAAQVSGADVKTIIF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEECHHHHHHHHCCCCHHHHHHH
KYILPNVITPLPILLTLNAADAVLVLGSLGFLGLGVPADVPEWGSDLNLALAALPTGIWW
HHHHHHHHCCCHHEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHH
TALFPGLAMFFLVLGLSFIGEDLEEIFDSQNSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]