Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 78778775

GI number: 78778775

Start: 370732

End: 371367

Strand: Direct

Name: yggS [C]

Synonym: PMT9312_0390

Alternate gene names: 78778775

Gene position: 370732-371367 (Clockwise)

Preceding gene: 78778774

Following gene: 78778776

Centisome position: 21.69

GC content: 30.97

Gene sequence:

>636_bases
GTGAACCCTTCAAATTATTTAAAAATAAAAAATAAAATCCCATCAAATGTAAATATCCTTGCAGTAAGTAAAGGATTTAA
AAGTCAAGAAATCAAGACTATTCAAAATATAGGTCAGAATGATTTTGGTGAGAGTAAGTTTCAGGAGGCTTTTGAGAAGC
AATTAATTCTAAAAGACCTTAAAAAAATAAAATGGCACTTTATTGGACGAATACAAAGTAATAAAATAAGAAAGATAGTG
CAAAATTTTAAATACATTCATTCTGTAGATTCATTTGAGAAGTTGCAAAAGATTTCTAATATTTCAGATGCAGAGAAGAA
AAATCCATTGATTATGTTGCAGGTTAAGTTGAGTGATGACCCTACAAAAGGAGGCTTTAATCCTGACCTTTTAGTATTGA
AATGGAGAGAAATTCAAGAATTGAAAAATATCACATTAACCGGTTTGATGACTATTAATCCTAAAGGACTTAGCTCCAAA
GAAAATACAAAGTTGTTTAAAAAATGTCGTTCCTTAGCGGATTCACTTCAACTTCCAGATTGTTCAATGGGAATGTCAGG
AGATTGGGAAGAAGCTATTGACGCTGGATCAACTTGGGTAAGGTTAGGATCATTAATTTTTGGAGATAGATCTTAA

Upstream 100 bases:

>100_bases
TCGTAATCAGGCAGAATTAAACCTTCAAAGAGCTAGAAGGACAAGATCTGAAGATCTACCAAAATGGGAGAATTTATTTA
CACAAACTTTTTTATAAAAG

Downstream 100 bases:

>100_bases
TTAGTAATTTTTATATAAAAATATTATTTATAAACTTGCAGTAAAGTACAACTAACGTTATTTAAGTATAGGTAGTTTAT
TCATTTCAAAAATGAATCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MNPSNYLKIKNKIPSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQEAFEKQLILKDLKKIKWHFIGRIQSNKIRKIV
QNFKYIHSVDSFEKLQKISNISDAEKKNPLIMLQVKLSDDPTKGGFNPDLLVLKWREIQELKNITLTGLMTINPKGLSSK
ENTKLFKKCRSLADSLQLPDCSMGMSGDWEEAIDAGSTWVRLGSLIFGDRS

Sequences:

>Translated_211_residues
MNPSNYLKIKNKIPSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQEAFEKQLILKDLKKIKWHFIGRIQSNKIRKIV
QNFKYIHSVDSFEKLQKISNISDAEKKNPLIMLQVKLSDDPTKGGFNPDLLVLKWREIQELKNITLTGLMTINPKGLSSK
ENTKLFKKCRSLADSLQLPDCSMGMSGDWEEAIDAGSTWVRLGSLIFGDRS
>Mature_211_residues
MNPSNYLKIKNKIPSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQEAFEKQLILKDLKKIKWHFIGRIQSNKIRKIV
QNFKYIHSVDSFEKLQKISNISDAEKKNPLIMLQVKLSDDPTKGGFNPDLLVLKWREIQELKNITLTGLMTINPKGLSSK
ENTKLFKKCRSLADSLQLPDCSMGMSGDWEEAIDAGSTWVRLGSLIFGDRS

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=213, Percent_Identity=35.2112676056338, Blast_Score=94, Evalue=1e-19,
Organism=Escherichia coli, GI1789321, Length=207, Percent_Identity=32.3671497584541, Blast_Score=108, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17533025, Length=216, Percent_Identity=37.037037037037, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=219, Percent_Identity=36.0730593607306, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45550861, Length=216, Percent_Identity=36.1111111111111, Blast_Score=101, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24003; Mature: 24003

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPSNYLKIKNKIPSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQEAFEKQLILKDL
CCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
KKIKWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISDAEKKNPLIMLQVKLSDD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEEECCC
PTKGGFNPDLLVLKWREIQELKNITLTGLMTINPKGLSSKENTKLFKKCRSLADSLQLPD
CCCCCCCCCEEEEEHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCC
CSMGMSGDWEEAIDAGSTWVRLGSLIFGDRS
CCCCCCCCHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNPSNYLKIKNKIPSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQEAFEKQLILKDL
CCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
KKIKWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISDAEKKNPLIMLQVKLSDD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEEECCC
PTKGGFNPDLLVLKWREIQELKNITLTGLMTINPKGLSSKENTKLFKKCRSLADSLQLPD
CCCCCCCCCEEEEEHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCC
CSMGMSGDWEEAIDAGSTWVRLGSLIFGDRS
CCCCCCCCHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]