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The map label for this gene is ctpA [H]

Identifier: 78778715

GI number: 78778715

Start: 312979

End: 314262

Strand: Reverse

Name: ctpA [H]

Synonym: PMT9312_0330

Alternate gene names: 78778715

Gene position: 314262-312979 (Counterclockwise)

Preceding gene: 78778718

Following gene: 78778714

Centisome position: 18.39

GC content: 35.67

Gene sequence:

>1284_bases
ATGAATTCATCTTTTAACAAACTTTTAACATTCAAAACATTGATCACTGCATTAATGATCATTGTTATTTATACCAATTT
TTTATTGATAGAAAGAGTTGATGCTCTTAGTGATAGCAAGCAATTAGTCCTTGATGCTTGGACTTTGGTAAATGAGGGTT
TTTATGACCCAGACAAGTTTGATGAAATACAATGGAAGAGAATTAGGCAAAAAACATTACAGAAACAAATTGAAACAAGT
GAAGAGGCTTATTCTGCAATTGAAGACATGTTAAGACCTCTAGAAGATCCTTATACAAGAATTTTACGACCCAAAGATTA
TGAACTCCTGAAATCAAGTAATTTTGGTAGCGAGATTAATGGAGTTGGGCTGCAATTGGGTGAAGATGATGATAGTAAAA
AGGTTAAAGTTATCTCTACTCTTGGCGGTTCTCCAGCAGAAGAAGCGGGAATAGTTAGCGGGGAATTCATAGAGAAAGTG
GATGGAATTTCATCAGAAGTATTAGGACTTGCAAATACTGCCTCTAAGTTAAGAGGCGAATCAGGAACCAAAGTTTTAGT
TCAAATTTCATCGGAAGCAGGAGAAATTCGAGAAGTAGATTTAGAAAGGCGATCAGTAGATCTTAGACCAGTTAGGACAA
AAAGATTAAGAGACGATTCTCACACAATAGGATATTTAAGGATTACTCAATTTAGCGAAAGCGTCCCAAAAAAAGTTGAA
GAAGCTCTTCAAGAGTTAAAAGAGAAAGAGGTTGAAGGATTGATTTTGGACCTTAGGAATAATTCAGGTGGACTAGTAAG
CTCAGGAATAGCGGTTGCAGACTCATTATTGAGTGAAAGACCAGTAGTAGAGACAAAAAATAGAAATGGAATCAAAGATG
CAATAATTTCTCAAAAAGAGACTTTTTTTGATGGCCCAATGGTAACTTTGGTAAATAAAGGAACTGCGAGTGCTAGTGAA
ATACTTGCCGGCTCATTGCAAGACAATAGCAGATCGATTCTCATGGGAGAACAAACCTACGGGAAAGGTTTAATTCAATC
CTTAAAAAGTTTGGGAGAAGACAGTGGAATAGCAATAACAGTTGCTAGTTATTTAACTCCTAAAGGTAATAATATCCAGG
GTCAAGGTATGAAACCTGACAAGTTATTGGATCTTCCAGATGCAACTGAATACGGAAGTGCTGATGACAAATGGGTGAAA
AATGCAGAATTATTTCTGGATTCACTACTAGAAAAAGAAGAAGTTTCTAGTCAAACTAGTGAATTAAGCAATGAAGAAGT
ATAA

Upstream 100 bases:

>100_bases
CAATCATAAACAGATGAAGAATTAGCCATCCAAAAAAAAATTAGCTTTGATATAAAGAGCTTACTTAAAATTCTTATACT
TGGTGTTAACACTTAACCCA

Downstream 100 bases:

>100_bases
ACCTGATTAAGCAAAAGATTTATAAATAAAACATTTTAAAAACTATGAGTATTAAAAGAATTTTTCATGACCCAATTCAC
AAAGAAATAGTATTTGATTC

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MNSSFNKLLTFKTLITALMIIVIYTNFLLIERVDALSDSKQLVLDAWTLVNEGFYDPDKFDEIQWKRIRQKTLQKQIETS
EEAYSAIEDMLRPLEDPYTRILRPKDYELLKSSNFGSEINGVGLQLGEDDDSKKVKVISTLGGSPAEEAGIVSGEFIEKV
DGISSEVLGLANTASKLRGESGTKVLVQISSEAGEIREVDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKVE
EALQELKEKEVEGLILDLRNNSGGLVSSGIAVADSLLSERPVVETKNRNGIKDAIISQKETFFDGPMVTLVNKGTASASE
ILAGSLQDNSRSILMGEQTYGKGLIQSLKSLGEDSGIAITVASYLTPKGNNIQGQGMKPDKLLDLPDATEYGSADDKWVK
NAELFLDSLLEKEEVSSQTSELSNEEV

Sequences:

>Translated_427_residues
MNSSFNKLLTFKTLITALMIIVIYTNFLLIERVDALSDSKQLVLDAWTLVNEGFYDPDKFDEIQWKRIRQKTLQKQIETS
EEAYSAIEDMLRPLEDPYTRILRPKDYELLKSSNFGSEINGVGLQLGEDDDSKKVKVISTLGGSPAEEAGIVSGEFIEKV
DGISSEVLGLANTASKLRGESGTKVLVQISSEAGEIREVDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKVE
EALQELKEKEVEGLILDLRNNSGGLVSSGIAVADSLLSERPVVETKNRNGIKDAIISQKETFFDGPMVTLVNKGTASASE
ILAGSLQDNSRSILMGEQTYGKGLIQSLKSLGEDSGIAITVASYLTPKGNNIQGQGMKPDKLLDLPDATEYGSADDKWVK
NAELFLDSLLEKEEVSSQTSELSNEEV
>Mature_427_residues
MNSSFNKLLTFKTLITALMIIVIYTNFLLIERVDALSDSKQLVLDAWTLVNEGFYDPDKFDEIQWKRIRQKTLQKQIETS
EEAYSAIEDMLRPLEDPYTRILRPKDYELLKSSNFGSEINGVGLQLGEDDDSKKVKVISTLGGSPAEEAGIVSGEFIEKV
DGISSEVLGLANTASKLRGESGTKVLVQISSEAGEIREVDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKVE
EALQELKEKEVEGLILDLRNNSGGLVSSGIAVADSLLSERPVVETKNRNGIKDAIISQKETFFDGPMVTLVNKGTASASE
ILAGSLQDNSRSILMGEQTYGKGLIQSLKSLGEDSGIAITVASYLTPKGNNIQGQGMKPDKLLDLPDATEYGSADDKWVK
NAELFLDSLLEKEEVSSQTSELSNEEV

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=349, Percent_Identity=27.2206303724928, Blast_Score=122, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 47062; Mature: 47062

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSFNKLLTFKTLITALMIIVIYTNFLLIERVDALSDSKQLVLDAWTLVNEGFYDPDKF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHH
DEIQWKRIRQKTLQKQIETSEEAYSAIEDMLRPLEDPYTRILRPKDYELLKSSNFGSEIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHCCCCCCCCC
GVGLQLGEDDDSKKVKVISTLGGSPAEEAGIVSGEFIEKVDGISSEVLGLANTASKLRGE
CCEEEECCCCCCCCEEEEEECCCCCCHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC
SGTKVLVQISSEAGEIREVDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKVE
CCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEEEEHHHHHHHHHHH
EALQELKEKEVEGLILDLRNNSGGLVSSGIAVADSLLSERPVVETKNRNGIKDAIISQKE
HHHHHHHHHHHCEEEEEEECCCCCEEHHHHHHHHHHHCCCCCEECCCCCCHHHHHHCCCH
TFFDGPMVTLVNKGTASASEILAGSLQDNSRSILMGEQTYGKGLIQSLKSLGEDSGIAIT
HHCCCCEEEEEECCCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEE
VASYLTPKGNNIQGQGMKPDKLLDLPDATEYGSADDKWVKNAELFLDSLLEKEEVSSQTS
EEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ELSNEEV
HCCCCCC
>Mature Secondary Structure
MNSSFNKLLTFKTLITALMIIVIYTNFLLIERVDALSDSKQLVLDAWTLVNEGFYDPDKF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHH
DEIQWKRIRQKTLQKQIETSEEAYSAIEDMLRPLEDPYTRILRPKDYELLKSSNFGSEIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHCCCCCCCCC
GVGLQLGEDDDSKKVKVISTLGGSPAEEAGIVSGEFIEKVDGISSEVLGLANTASKLRGE
CCEEEECCCCCCCCEEEEEECCCCCCHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC
SGTKVLVQISSEAGEIREVDLERRSVDLRPVRTKRLRDDSHTIGYLRITQFSESVPKKVE
CCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEEEEHHHHHHHHHHH
EALQELKEKEVEGLILDLRNNSGGLVSSGIAVADSLLSERPVVETKNRNGIKDAIISQKE
HHHHHHHHHHHCEEEEEEECCCCCEEHHHHHHHHHHHCCCCCEECCCCCCHHHHHHCCCH
TFFDGPMVTLVNKGTASASEILAGSLQDNSRSILMGEQTYGKGLIQSLKSLGEDSGIAIT
HHCCCCEEEEEECCCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEE
VASYLTPKGNNIQGQGMKPDKLLDLPDATEYGSADDKWVKNAELFLDSLLEKEEVSSQTS
EEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ELSNEEV
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]