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The map label for this gene is psbB [H]

Identifier: 78778706

GI number: 78778706

Start: 305570

End: 307093

Strand: Reverse

Name: psbB [H]

Synonym: PMT9312_0321

Alternate gene names: 78778706

Gene position: 307093-305570 (Counterclockwise)

Preceding gene: 78778711

Following gene: 78778705

Centisome position: 17.97

GC content: 41.4

Gene sequence:

>1524_bases
ATGGGATTGCCTTGGTATCGAGTTCACACAGTAGTTATTAATGACCCAGGTCGACTACTTGCTGTGCATCTTATGCATAC
TGCATTATTAGCCGGCTGGGCCGGTTCTATGGCTCTTTATGAATTAGCCATTTTTGATCCTTCTGATGCTGTTCTCAATC
CAATGTGGAGACAGGGAATGTACGTTATGCCTTTCATGGCGAGACTAGGTATCACAAGTAGTTGGAACGGATGGGATATT
ACAGGTGCTACAGGAGTTGATCCTGGATTCTGGAGTTTTGAAGGGGTTGCAGCAGCACACATAGTATTTAGCGGACTATT
GATGTTGGCCTCTATTTGGCACTGGACATACTGGGATTTAGATTTATGGGAAGATTCAAGAACAGGTGAGCCTGCTTTGG
ACCTTCCAAGAATATTTGGAATTCACCTTCTTCTAGCTGGACTAACATGTTTTGGTTTTGGAGCTTTTCATTGCGCAAAC
GTAGGGATTTGGGTTTCTGATCCTTATGGTTTAACTGGTCATGTAGAGCCTGTTGCCCCTTCCTGGGGAGTGGAGGGATT
TAATCCTTTTAATCCTGGAGGAATAGTTGCAAATCATATTGCGGCTGGACTTATGGGTATCATTGGAGGTATTTTTCACA
TTACCAATAGACCTGGAGAAAGACTTTATAGAGCATTAAAACTTGGAAGCCTTGAAGGAGTTCTAGCTAGTGCTCTAGCT
GCTGTATTATTTGTATCTTTTGTAGTTGCAGGCACAATGTGGTACGGTTCAGCGACCACTCCTGTCGAGTTATTTGGTCC
TACTAGGTATCAATGGGACTCTGGCTATTTTAAAACTGAAATCAATAGAAGGGTTCAAGCTTCTATAGATAATGGTGCAA
CTAAAGAAGAGGCATATGCATCTATTCCAGAGAAACTAGCCTTCTACGATTATGTTGGTAATAGTCCAGCAAAAGGTGGA
TTATTCAGAGTTGGAGCACTCGTTAATGGCGATGGTTTACCAACTGGCTGGCAAGGTCATATTGCTTTTCAAGACAAGGA
AGGTAACGATTTAGAAGTCAGAAGAATACCTAATTTCTTTGAAAACTTCCCTGTGATTCTTGAAGATAAAGAGGGAAATG
TAAGAGCTGATATTCCATTTAGAAGAGCTGAAGCAAAGTATTCATTTGAACAAACTGGCATTACAGCAACTATCTATGGG
GGTGACCTAAATGGGCAAACATTTACTGACCCTGCAGTAGTTAAAAGATTAGCTAGAAAAGCGCAGCTTGGAGAAGCATT
CAAGTTCGACAGAGAAACTTACAAATCTGACGGTGTATTCCGAAGTTCACCAAGAGCATGGTTTACATACGCTCATCTAT
GTTTCGGATTACTATTCTTGTTTGGCCACTGGTGGCATGCTTCAAGAACTCTTTACAAAAATTCCTTTGCTGGTATTGAC
GCTGAGATTGGTGACCAAGTTGAATTTGGTTTATTCAAGAAACTTGGTGATGAAACCACAAGAAGAATCCCAGGAAGGGT
TTAA

Upstream 100 bases:

>100_bases
AAGAAAATAAATTTATTTACAAAAATCCCTCAAAGACTAAAAAACCCTTACTATCGTGATGTTTAGCTGTTTATTCAGCA
TAGTTACTAGAAATTAACCG

Downstream 100 bases:

>100_bases
ACTAAACTTTATTAATTAATCTTATGGAAGCTTTTGCTTACGTTCTTATTTTAACTCTCGCAGTTGTAACACTATTCTTT
GCTGTCGCCTTTAGAGACCC

Product: photosystem II PsbB protein (CP47)

Products: NA

Alternate protein names: Protein CP-47 [H]

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MGLPWYRVHTVVINDPGRLLAVHLMHTALLAGWAGSMALYELAIFDPSDAVLNPMWRQGMYVMPFMARLGITSSWNGWDI
TGATGVDPGFWSFEGVAAAHIVFSGLLMLASIWHWTYWDLDLWEDSRTGEPALDLPRIFGIHLLLAGLTCFGFGAFHCAN
VGIWVSDPYGLTGHVEPVAPSWGVEGFNPFNPGGIVANHIAAGLMGIIGGIFHITNRPGERLYRALKLGSLEGVLASALA
AVLFVSFVVAGTMWYGSATTPVELFGPTRYQWDSGYFKTEINRRVQASIDNGATKEEAYASIPEKLAFYDYVGNSPAKGG
LFRVGALVNGDGLPTGWQGHIAFQDKEGNDLEVRRIPNFFENFPVILEDKEGNVRADIPFRRAEAKYSFEQTGITATIYG
GDLNGQTFTDPAVVKRLARKAQLGEAFKFDRETYKSDGVFRSSPRAWFTYAHLCFGLLFLFGHWWHASRTLYKNSFAGID
AEIGDQVEFGLFKKLGDETTRRIPGRV

Sequences:

>Translated_507_residues
MGLPWYRVHTVVINDPGRLLAVHLMHTALLAGWAGSMALYELAIFDPSDAVLNPMWRQGMYVMPFMARLGITSSWNGWDI
TGATGVDPGFWSFEGVAAAHIVFSGLLMLASIWHWTYWDLDLWEDSRTGEPALDLPRIFGIHLLLAGLTCFGFGAFHCAN
VGIWVSDPYGLTGHVEPVAPSWGVEGFNPFNPGGIVANHIAAGLMGIIGGIFHITNRPGERLYRALKLGSLEGVLASALA
AVLFVSFVVAGTMWYGSATTPVELFGPTRYQWDSGYFKTEINRRVQASIDNGATKEEAYASIPEKLAFYDYVGNSPAKGG
LFRVGALVNGDGLPTGWQGHIAFQDKEGNDLEVRRIPNFFENFPVILEDKEGNVRADIPFRRAEAKYSFEQTGITATIYG
GDLNGQTFTDPAVVKRLARKAQLGEAFKFDRETYKSDGVFRSSPRAWFTYAHLCFGLLFLFGHWWHASRTLYKNSFAGID
AEIGDQVEFGLFKKLGDETTRRIPGRV
>Mature_506_residues
GLPWYRVHTVVINDPGRLLAVHLMHTALLAGWAGSMALYELAIFDPSDAVLNPMWRQGMYVMPFMARLGITSSWNGWDIT
GATGVDPGFWSFEGVAAAHIVFSGLLMLASIWHWTYWDLDLWEDSRTGEPALDLPRIFGIHLLLAGLTCFGFGAFHCANV
GIWVSDPYGLTGHVEPVAPSWGVEGFNPFNPGGIVANHIAAGLMGIIGGIFHITNRPGERLYRALKLGSLEGVLASALAA
VLFVSFVVAGTMWYGSATTPVELFGPTRYQWDSGYFKTEINRRVQASIDNGATKEEAYASIPEKLAFYDYVGNSPAKGGL
FRVGALVNGDGLPTGWQGHIAFQDKEGNDLEVRRIPNFFENFPVILEDKEGNVRADIPFRRAEAKYSFEQTGITATIYGG
DLNGQTFTDPAVVKRLARKAQLGEAFKFDRETYKSDGVFRSSPRAWFTYAHLCFGLLFLFGHWWHASRTLYKNSFAGIDA
EIGDQVEFGLFKKLGDETTRRIPGRV

Specific function: This protein conjugates with chlorophyll and catalyzes the primary light-induced photochemical processes of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR017486 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 56030; Mature: 55899

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLPWYRVHTVVINDPGRLLAVHLMHTALLAGWAGSMALYELAIFDPSDAVLNPMWRQGM
CCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHCHHHHCCE
YVMPFMARLGITSSWNGWDITGATGVDPGFWSFEGVAAAHIVFSGLLMLASIWHWTYWDL
EHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEE
DLWEDSRTGEPALDLPRIFGIHLLLAGLTCFGFGAFHCANVGIWVSDPYGLTGHVEPVAP
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCC
SWGVEGFNPFNPGGIVANHIAAGLMGIIGGIFHITNRPGERLYRALKLGSLEGVLASALA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH
AVLFVSFVVAGTMWYGSATTPVELFGPTRYQWDSGYFKTEINRRVQASIDNGATKEEAYA
HHHHHHHHHHHHHEECCCCCCEEECCCCCEECCCCEEEEHHCCEEEEECCCCCCHHHHHH
SIPEKLAFYDYVGNSPAKGGLFRVGALVNGDGLPTGWQGHIAFQDKEGNDLEVRRIPNFF
HCHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCEEHEECCHHH
ENFPVILEDKEGNVRADIPFRRAEAKYSFEQTGITATIYGGDLNGQTFTDPAVVKRLARK
HCCCEEEECCCCCEEECCCCHHHCCCCCHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHH
AQLGEAFKFDRETYKSDGVFRSSPRAWFTYAHLCFGLLFLFGHWWHASRTLYKNSFAGID
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCC
AEIGDQVEFGLFKKLGDETTRRIPGRV
CCCCCCHHHHHHHHHCCHHHHCCCCCC
>Mature Secondary Structure 
GLPWYRVHTVVINDPGRLLAVHLMHTALLAGWAGSMALYELAIFDPSDAVLNPMWRQGM
CCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHCHHHHCCE
YVMPFMARLGITSSWNGWDITGATGVDPGFWSFEGVAAAHIVFSGLLMLASIWHWTYWDL
EHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEE
DLWEDSRTGEPALDLPRIFGIHLLLAGLTCFGFGAFHCANVGIWVSDPYGLTGHVEPVAP
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCC
SWGVEGFNPFNPGGIVANHIAAGLMGIIGGIFHITNRPGERLYRALKLGSLEGVLASALA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH
AVLFVSFVVAGTMWYGSATTPVELFGPTRYQWDSGYFKTEINRRVQASIDNGATKEEAYA
HHHHHHHHHHHHHEECCCCCCEEECCCCCEECCCCEEEEHHCCEEEEECCCCCCHHHHHH
SIPEKLAFYDYVGNSPAKGGLFRVGALVNGDGLPTGWQGHIAFQDKEGNDLEVRRIPNFF
HCHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCEEHEECCHHH
ENFPVILEDKEGNVRADIPFRRAEAKYSFEQTGITATIYGGDLNGQTFTDPAVVKRLARK
HCCCEEEECCCCCEEECCCCHHHCCCCCHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHH
AQLGEAFKFDRETYKSDGVFRSSPRAWFTYAHLCFGLLFLFGHWWHASRTLYKNSFAGID
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCC
AEIGDQVEFGLFKKLGDETTRRIPGRV
CCCCCCHHHHHHHHHCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8318542 [H]