Click here to switch to the map view.

The map label for this gene is 78778623

Identifier: 78778623

GI number: 78778623

Start: 229042

End: 229842

Strand: Reverse

Name: 78778623

Synonym: PMT9312_0238

Alternate gene names: NA

Gene position: 229842-229042 (Counterclockwise)

Preceding gene: 78778626

Following gene: 78778621

Centisome position: 13.45

GC content: 31.84

Gene sequence:

>801_bases
TTGCATATTGAAGGTACTGTAATTCATGATGCATGTCATAAAGCGGCCCATCCGGTACCTTGGATAAATCAAGCAATGGG
TCATGGCTCAGCAATTCTTTTAGGATTTAGTTTTCCAGTTTTTACAAGAGTACATTTACAACATCATATTCACGTAAATC
ATCCCAAAAATGACCCAGATCATATTGTCAGTACTTTTGGTCCAATTTGGCTAATTGCTCCGAGATTTTTTTATCATGAA
GTTTTTTTCTTTCAAAGGAAACTTTGGCGAAAATATGAATTACTCCAATGGGGAATTGAAAGGTCAATCTTCATATCCAT
AATCTTGGCAGGTATAAAGTTTGACTTCATGAATCTAATCTATAATCTATGGTTCGGACCTGCATTAATGGTGGGAGTTA
CTTTAGGAATATTTTTTGATTATCTCCCCCATAGACCTTTTCGATCAAGAAACAAGTGGATAAATTCTCGAGTTTATCCA
AGCAAATTTATGAATTTATTAATAATGGGCCAAAATTACCATCTTATTCACCATCTTTGGCCTTCCATTCCTTGGTTTGA
ATACAAAGTAGCATATGAAAAAACTAAGCCATTATTGGATACGAAAGGCTCACCTCAAAGAGTTGGAATTTTTGAAAGTA
AAGAAGACATTTTTAACTTTATTTATGATTTATTTATAGGTATAAGGAGTCATAGCAAAAAGAGAGGTAAAATAAGGAAA
ATTATAAATTTGTATCCAGGCTATAAAATAAAAAAAGTTTTATTAAAGATAGTTAATAAAACTTTTATAGGCAGCAAATA
A

Upstream 100 bases:

>100_bases
TCTTTTCTTTGGAGGTTATTTTCTTGCTTTTCTTAGCATATGGCAATGGTATAGAGGTGTTTGGCCTCTACCCTTACTTG
TAGCAACTGCATTTTTAGCT

Downstream 100 bases:

>100_bases
TTCATTCATTCATAATTTTTGGTACTTTAAAGTATTTATCTTCTCTAGATGGGCCTAACTCTAAAATCTCTTCAGTGCAA
TCAGAATTTTTCTTATCGTC

Product: beta-carotene hydroxylase

Products: NA

Alternate protein names: Fatty Acid Desaturase; Fatty Acid Desaturase Domain Protein; Electron Transfer Protein FdxB; Beta-Carotene Oxygenase CrtR; Beta Carotene Hydroxylase; Phthalate 4 5-Dioxygenase; B-Carotene Hydroxylase; Delta(12)-Fatty Acid Dehydrogenase

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MHIEGTVIHDACHKAAHPVPWINQAMGHGSAILLGFSFPVFTRVHLQHHIHVNHPKNDPDHIVSTFGPIWLIAPRFFYHE
VFFFQRKLWRKYELLQWGIERSIFISIILAGIKFDFMNLIYNLWFGPALMVGVTLGIFFDYLPHRPFRSRNKWINSRVYP
SKFMNLLIMGQNYHLIHHLWPSIPWFEYKVAYEKTKPLLDTKGSPQRVGIFESKEDIFNFIYDLFIGIRSHSKKRGKIRK
IINLYPGYKIKKVLLKIVNKTFIGSK

Sequences:

>Translated_266_residues
MHIEGTVIHDACHKAAHPVPWINQAMGHGSAILLGFSFPVFTRVHLQHHIHVNHPKNDPDHIVSTFGPIWLIAPRFFYHE
VFFFQRKLWRKYELLQWGIERSIFISIILAGIKFDFMNLIYNLWFGPALMVGVTLGIFFDYLPHRPFRSRNKWINSRVYP
SKFMNLLIMGQNYHLIHHLWPSIPWFEYKVAYEKTKPLLDTKGSPQRVGIFESKEDIFNFIYDLFIGIRSHSKKRGKIRK
IINLYPGYKIKKVLLKIVNKTFIGSK
>Mature_266_residues
MHIEGTVIHDACHKAAHPVPWINQAMGHGSAILLGFSFPVFTRVHLQHHIHVNHPKNDPDHIVSTFGPIWLIAPRFFYHE
VFFFQRKLWRKYELLQWGIERSIFISIILAGIKFDFMNLIYNLWFGPALMVGVTLGIFFDYLPHRPFRSRNKWINSRVYP
SKFMNLLIMGQNYHLIHHLWPSIPWFEYKVAYEKTKPLLDTKGSPQRVGIFESKEDIFNFIYDLFIGIRSHSKKRGKIRK
IINLYPGYKIKKVLLKIVNKTFIGSK

Specific function: Unknown

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.14.13.-

Molecular weight: Translated: 31441; Mature: 31441

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIEGTVIHDACHKAAHPVPWINQAMGHGSAILLGFSFPVFTRVHLQHHIHVNHPKNDPD
CCCCCEEHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHEEEEECCCCCCHH
HIVSTFGPIWLIAPRFFYHEVFFFQRKLWRKYELLQWGIERSIFISIILAGIKFDFMNLI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YNLWFGPALMVGVTLGIFFDYLPHRPFRSRNKWINSRVYPSKFMNLLIMGQNYHLIHHLW
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHEEEEECCCCHHHHHHC
PSIPWFEYKVAYEKTKPLLDTKGSPQRVGIFESKEDIFNFIYDLFIGIRSHSKKRGKIRK
CCCCCEEEEEEHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
IINLYPGYKIKKVLLKIVNKTFIGSK
HHHHCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHIEGTVIHDACHKAAHPVPWINQAMGHGSAILLGFSFPVFTRVHLQHHIHVNHPKNDPD
CCCCCEEHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHEEEEECCCCCCHH
HIVSTFGPIWLIAPRFFYHEVFFFQRKLWRKYELLQWGIERSIFISIILAGIKFDFMNLI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YNLWFGPALMVGVTLGIFFDYLPHRPFRSRNKWINSRVYPSKFMNLLIMGQNYHLIHHLW
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHEEEEECCCCHHHHHHC
PSIPWFEYKVAYEKTKPLLDTKGSPQRVGIFESKEDIFNFIYDLFIGIRSHSKKRGKIRK
CCCCCEEEEEEHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
IINLYPGYKIKKVLLKIVNKTFIGSK
HHHHCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA