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The map label for this gene is yocS [H]

Identifier: 78484752

GI number: 78484752

Start: 457832

End: 458701

Strand: Reverse

Name: yocS [H]

Synonym: Tcr_0407

Alternate gene names: 78484752

Gene position: 458701-457832 (Counterclockwise)

Preceding gene: 78484753

Following gene: 78484749

Centisome position: 18.89

GC content: 46.32

Gene sequence:

>870_bases
ATGACTGCTGACTTACTGACCCAAGTGATTCTTCCACTGGCCCTTTTTCTGATTATGTTTGGAATGGGCTTATCTCTTCG
TCCCGTTGATTTCAAAAATGTATTGGCCGCTCCCAAAGCGGTTGGCATCGGCCTGATCGGCCAAATGGTGTTACTGCCAT
TGGTGGCTTTCTTCATTGCCTTGGCGCTTAAGCTGCCGCCAGAAATTGCGGTGGGATTAATGATCATTGCTTTAGCTCCG
GGTGGTGCGACCTCGAACATGTTCACGTATTTATCGAAAGGCGATGTGTCGCTTTCGATCAGTTTGACCGCCGTCGTGAG
TTTGATTGCACCCTTCAGCATTCCAATCATCACGGCTTTGAGCATGACCTATTTTATGGGTAACACCACCGAATTCAGTT
TGCCGATTGTCAAAACCATCATGCAACTGTTAGTCATCACTGTGATCCCCGTCGCACTTGGCATGCTGGTACTGGCACGT
TGGTCTCACATGGCCGCTAAAATCGAACAAATTTTAAAATGGTTTTCGATTGCCTTTTTATTCCTCATTATTGTCTTGAT
TGTGTTGAAAAATGCCGACAATATGATGAGCTTTTTTATGCAAGCGGGCTTGGCAACGTTCGTTTTGAACATTGCTGTAT
TGGTATTAGGCGTCTATCTTGCGAAATGGGCCAAACTGTCCGATGCCCAATCCATCTCCATCGGCTTTGAAGTGGGGATT
CAGAATGGCACCTTGGCACTGGTGGTGGCCGGAACATTAATTGGCAACAGCACCATGATGATTCCAGCCGTGACGTATTC
TTTGCTAATGTTCATCACAGGTGCGGCTTTTGCAATGTTGATTACACGTCGAAAAAATAGCGCGGCTTAA

Upstream 100 bases:

>100_bases
TCGAACCGAAAGAGAACCGGTTGAACACTTTACTCAGTTCTTTGATTAAAAAATTCGGTAAAATACGAACACTTTTTAAT
AACGTTAAGACTTTAAAACA

Downstream 100 bases:

>100_bases
CGGCTTAGAATCAACCTCCCCGAGGACCAGATGGTCGGCTTTTTAAGCCTTAAAACAGACGCTGTAATCGCGCTGTGACC
ATCTGTCCCATCACTTTTAA

Product: bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTADLLTQVILPLALFLIMFGMGLSLRPVDFKNVLAAPKAVGIGLIGQMVLLPLVAFFIALALKLPPEIAVGLMIIALAP
GGATSNMFTYLSKGDVSLSISLTAVVSLIAPFSIPIITALSMTYFMGNTTEFSLPIVKTIMQLLVITVIPVALGMLVLAR
WSHMAAKIEQILKWFSIAFLFLIIVLIVLKNADNMMSFFMQAGLATFVLNIAVLVLGVYLAKWAKLSDAQSISIGFEVGI
QNGTLALVVAGTLIGNSTMMIPAVTYSLLMFITGAAFAMLITRRKNSAA

Sequences:

>Translated_289_residues
MTADLLTQVILPLALFLIMFGMGLSLRPVDFKNVLAAPKAVGIGLIGQMVLLPLVAFFIALALKLPPEIAVGLMIIALAP
GGATSNMFTYLSKGDVSLSISLTAVVSLIAPFSIPIITALSMTYFMGNTTEFSLPIVKTIMQLLVITVIPVALGMLVLAR
WSHMAAKIEQILKWFSIAFLFLIIVLIVLKNADNMMSFFMQAGLATFVLNIAVLVLGVYLAKWAKLSDAQSISIGFEVGI
QNGTLALVVAGTLIGNSTMMIPAVTYSLLMFITGAAFAMLITRRKNSAA
>Mature_288_residues
TADLLTQVILPLALFLIMFGMGLSLRPVDFKNVLAAPKAVGIGLIGQMVLLPLVAFFIALALKLPPEIAVGLMIIALAPG
GATSNMFTYLSKGDVSLSISLTAVVSLIAPFSIPIITALSMTYFMGNTTEFSLPIVKTIMQLLVITVIPVALGMLVLARW
SHMAAKIEQILKWFSIAFLFLIIVLIVLKNADNMMSFFMQAGLATFVLNIAVLVLGVYLAKWAKLSDAQSISIGFEVGIQ
NGTLALVVAGTLIGNSTMMIPAVTYSLLMFITGAAFAMLITRRKNSAA

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI215422368, Length=222, Percent_Identity=31.5315315315315, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI215422370, Length=222, Percent_Identity=31.5315315315315, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI9790143, Length=222, Percent_Identity=31.5315315315315, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4506973, Length=239, Percent_Identity=30.9623430962343, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI37537552, Length=158, Percent_Identity=31.0126582278481, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI4506971, Length=157, Percent_Identity=29.2993630573248, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 30831; Mature: 30700

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADLLTQVILPLALFLIMFGMGLSLRPVDFKNVLAAPKAVGIGLIGQMVLLPLVAFFIA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LALKLPPEIAVGLMIIALAPGGATSNMFTYLSKGDVSLSISLTAVVSLIAPFSIPIITAL
HHHHCCHHHHHHHHHEEECCCCCCHHHHHHEECCCEEEEHHHHHHHHHHHHHHHHHHHHH
SMTYFMGNTTEFSLPIVKTIMQLLVITVIPVALGMLVLARWSHMAAKIEQILKWFSIAFL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLIIVLIVLKNADNMMSFFMQAGLATFVLNIAVLVLGVYLAKWAKLSDAQSISIGFEVGI
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
QNGTLALVVAGTLIGNSTMMIPAVTYSLLMFITGAAFAMLITRRKNSAA
CCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TADLLTQVILPLALFLIMFGMGLSLRPVDFKNVLAAPKAVGIGLIGQMVLLPLVAFFIA
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LALKLPPEIAVGLMIIALAPGGATSNMFTYLSKGDVSLSISLTAVVSLIAPFSIPIITAL
HHHHCCHHHHHHHHHEEECCCCCCHHHHHHEECCCEEEEHHHHHHHHHHHHHHHHHHHHH
SMTYFMGNTTEFSLPIVKTIMQLLVITVIPVALGMLVLARWSHMAAKIEQILKWFSIAFL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLIIVLIVLKNADNMMSFFMQAGLATFVLNIAVLVLGVYLAKWAKLSDAQSISIGFEVGI
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
QNGTLALVVAGTLIGNSTMMIPAVTYSLLMFITGAAFAMLITRRKNSAA
CCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]