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The map label for this gene is yqaA [H]

Identifier: 78484574

GI number: 78484574

Start: 274176

End: 274607

Strand: Reverse

Name: yqaA [H]

Synonym: Tcr_0229

Alternate gene names: 78484574

Gene position: 274607-274176 (Counterclockwise)

Preceding gene: 78484578

Following gene: 78484569

Centisome position: 11.31

GC content: 47.22

Gene sequence:

>432_bases
ATGGACAGTTATCTTTCTTTATTTTTAGTCTCATTTTTGGCCGCAACGCTGTTACCAGCAGGATCGGAAATTTTATTATT
GGGGCTGGCTTCAGCAGGGCATGACCCGTGGCATTTATGGTTTTGGGCCACACTGGGCAACACGCTGGGCGCAATGCTGA
ACTACGCTTTGGGGCGTTATTTACTGCATTACCAAGACCGACGCTGGTTTCCAATCAAGCCTAAAACCCTGGAAGCCAGC
CAACATTGGTTTCAACGCTATGGCACCTGGTCATTATTATTGGCTTGGGCCCCTATTTTCGGTGATGCCTTAACCTTCAT
TGCAGGCATTATGCGAGTGCGCTTTTATTGGTTTGTGATTTTAGTTTTCATTGGTAAAGGGGCTCGTTATGCAATTCTGC
TCGGCCTGCTCGATTGGCTGATGTCCTCTTAG

Upstream 100 bases:

>100_bases
AATTTTTCAATGATTGAAATAATCTCTGTTTAATATTCGCCAGGCCTGGCGGATTTTTAATGGTGCCGCACGATTCATTC
GGAAGGAGTAGAATACCGAA

Downstream 100 bases:

>100_bases
CCAATTCACCAAGCCTCTTCAAACCACTCCAACCGTTTTTTATTTTTTCACGAGATGTTCGCACACAGCAATTTGAAATT
TCTGACTGGCTTCAAGATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MDSYLSLFLVSFLAATLLPAGSEILLLGLASAGHDPWHLWFWATLGNTLGAMLNYALGRYLLHYQDRRWFPIKPKTLEAS
QHWFQRYGTWSLLLAWAPIFGDALTFIAGIMRVRFYWFVILVFIGKGARYAILLGLLDWLMSS

Sequences:

>Translated_143_residues
MDSYLSLFLVSFLAATLLPAGSEILLLGLASAGHDPWHLWFWATLGNTLGAMLNYALGRYLLHYQDRRWFPIKPKTLEAS
QHWFQRYGTWSLLLAWAPIFGDALTFIAGIMRVRFYWFVILVFIGKGARYAILLGLLDWLMSS
>Mature_143_residues
MDSYLSLFLVSFLAATLLPAGSEILLLGLASAGHDPWHLWFWATLGNTLGAMLNYALGRYLLHYQDRRWFPIKPKTLEAS
QHWFQRYGTWSLLLAWAPIFGDALTFIAGIMRVRFYWFVILVFIGKGARYAILLGLLDWLMSS

Specific function: Unknown

COG id: COG1238

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0489 [H]

Homologues:

Organism=Escherichia coli, GI1789045, Length=129, Percent_Identity=40.3100775193798, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 16403; Mature: 16403

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSYLSLFLVSFLAATLLPAGSEILLLGLASAGHDPWHLWFWATLGNTLGAMLNYALGRY
CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLHYQDRRWFPIKPKTLEASQHWFQRYGTWSLLLAWAPIFGDALTFIAGIMRVRFYWFVI
HHHHCCCEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVFIGKGARYAILLGLLDWLMSS
HHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDSYLSLFLVSFLAATLLPAGSEILLLGLASAGHDPWHLWFWATLGNTLGAMLNYALGRY
CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLHYQDRRWFPIKPKTLEASQHWFQRYGTWSLLLAWAPIFGDALTFIAGIMRVRFYWFVI
HHHHCCCEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVFIGKGARYAILLGLLDWLMSS
HHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]