Click here to switch to the map view.

The map label for this gene is agaA [H]

Identifier: 78484555

GI number: 78484555

Start: 249189

End: 250133

Strand: Reverse

Name: agaA [H]

Synonym: Tcr_0210

Alternate gene names: 78484555

Gene position: 250133-249189 (Counterclockwise)

Preceding gene: 78484556

Following gene: 78484554

Centisome position: 10.3

GC content: 44.76

Gene sequence:

>945_bases
ATGAGATTCTCTTTATTCCTTTGCACTCTAACCGTCTCTTTATCGAGTTTTCACGCCTCATCTCTTTTTGCTCAACCCCC
CACTCCACCGTCCTCTTTTACGGCTGAAAAAACCCTACTTGAAAAGGCACCGACACCAGAAAAACTTTCCAGCTTGTATC
GAGACCTAGATCAAGATGGCGTGGTAGATAAACAAGATCATTGTTTAAACAGCTTACCGAACCAACCGGTGAATGCTTTT
GGGTGTGAAGCAGACGAAGATCACGATGGGGTCGTGGACCGATTGGATCAATGTCATAAAACGCCCATCGGTATCAGTGT
CAACGAGGTCGGCTGTGAAGGCGATGCTGACTTGGATGGTATCATTGACTCTTTAGATCAGTGTCCAGGCACTCTGCCAG
GGGTGGTCGTCAACAAAGCTGGCTGCCGCCTTGATACCGATCTTGATAGAGACGGTGTTTTAAACAACAAGGATCAATGC
CCTAACACCCCGATCGGTGTGACGGTTAACCAATACGGTTGCGAACCTAAAAGCTTAGTGGTGACAAATATCGTGTTTGA
TTTGGGATCGTATAAAATTCGTCCGGATCAAAAGCCCATTTTGGATAAAGACATCAGCCAATTACGAAGTCTTAAAGACC
ATGAACGCATTGTCATTACTGGCTTTACTGATTCCTTGGGCAGTGAATCCAGTAATTTGAAATTGTCTTGGAATCGCGCG
CAAGCCACCAAAGATTACCTTGTTCGGAAGTTTAAGTACGACCCTGCCTCTATTTTGGTGCTTGGCAAAGGCGAAGCCAA
TCCCGTTGCAACAAATAAAACCAAAGAAGGACGAAAACAAAATCGACGTATTTCTTTTATGATAATGGACCAACAGATAG
TGCCCAATGAAGCACTTGCGGCCTTACCAGACGACATGAAACACTATAACCGCTATCAAGAATAA

Upstream 100 bases:

>100_bases
TTGAAGGCCCATTCAAGCAAAAATTCCTCGTTTTTATGCCCTTTTTTGCTGTAAAATCAGGACACTACCTAACAATACAA
TTCAAAAAACAAGGTTACTG

Downstream 100 bases:

>100_bases
TCATGATGCCTGACTTATGACCAAACGACTGCTCATACTTTTTCTTAGCTCAATATCCCTTAGTTGGGCGGCGCCTTCAA
AGGCCCCGCAGGTCATCAGC

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MRFSLFLCTLTVSLSSFHASSLFAQPPTPPSSFTAEKTLLEKAPTPEKLSSLYRDLDQDGVVDKQDHCLNSLPNQPVNAF
GCEADEDHDGVVDRLDQCHKTPIGISVNEVGCEGDADLDGIIDSLDQCPGTLPGVVVNKAGCRLDTDLDRDGVLNNKDQC
PNTPIGVTVNQYGCEPKSLVVTNIVFDLGSYKIRPDQKPILDKDISQLRSLKDHERIVITGFTDSLGSESSNLKLSWNRA
QATKDYLVRKFKYDPASILVLGKGEANPVATNKTKEGRKQNRRISFMIMDQQIVPNEALAALPDDMKHYNRYQE

Sequences:

>Translated_314_residues
MRFSLFLCTLTVSLSSFHASSLFAQPPTPPSSFTAEKTLLEKAPTPEKLSSLYRDLDQDGVVDKQDHCLNSLPNQPVNAF
GCEADEDHDGVVDRLDQCHKTPIGISVNEVGCEGDADLDGIIDSLDQCPGTLPGVVVNKAGCRLDTDLDRDGVLNNKDQC
PNTPIGVTVNQYGCEPKSLVVTNIVFDLGSYKIRPDQKPILDKDISQLRSLKDHERIVITGFTDSLGSESSNLKLSWNRA
QATKDYLVRKFKYDPASILVLGKGEANPVATNKTKEGRKQNRRISFMIMDQQIVPNEALAALPDDMKHYNRYQE
>Mature_314_residues
MRFSLFLCTLTVSLSSFHASSLFAQPPTPPSSFTAEKTLLEKAPTPEKLSSLYRDLDQDGVVDKQDHCLNSLPNQPVNAF
GCEADEDHDGVVDRLDQCHKTPIGISVNEVGCEGDADLDGIIDSLDQCPGTLPGVVVNKAGCRLDTDLDRDGVLNNKDQC
PNTPIGVTVNQYGCEPKSLVVTNIVFDLGSYKIRPDQKPILDKDISQLRSLKDHERIVITGFTDSLGSESSNLKLSWNRA
QATKDYLVRKFKYDPASILVLGKGEANPVATNKTKEGRKQNRRISFMIMDQQIVPNEALAALPDDMKHYNRYQE

Specific function: Alpha-agarase. Does not hydrolyze agarotetraose, agarohexaose, kappa-carrageenan, iota-carrageenen or lambda- carrageenan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 CBM6 (carbohydrate binding type-6) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR006584
- InterPro:   IPR008979
- InterPro:   IPR003367 [H]

Pfam domain/function: PF03422 CBM_6; PF02412 TSP_3 [H]

EC number: =3.2.1.158 [H]

Molecular weight: Translated: 34681; Mature: 34681

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSLFLCTLTVSLSSFHASSLFAQPPTPPSSFTAEKTLLEKAPTPEKLSSLYRDLDQDG
CCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCC
VVDKQDHCLNSLPNQPVNAFGCEADEDHDGVVDRLDQCHKTPIGISVNEVGCEGDADLDG
CCCCHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCHHH
IIDSLDQCPGTLPGVVVNKAGCRLDTDLDRDGVLNNKDQCPNTPIGVTVNQYGCEPKSLV
HHHHHHHCCCCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHH
VTNIVFDLGSYKIRPDQKPILDKDISQLRSLKDHERIVITGFTDSLGSESSNLKLSWNRA
HHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEECHH
QATKDYLVRKFKYDPASILVLGKGEANPVATNKTKEGRKQNRRISFMIMDQQIVPNEALA
HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHCCEEEEEEECCCCCCCHHHH
ALPDDMKHYNRYQE
HCCHHHHHHHHCCC
>Mature Secondary Structure
MRFSLFLCTLTVSLSSFHASSLFAQPPTPPSSFTAEKTLLEKAPTPEKLSSLYRDLDQDG
CCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCC
VVDKQDHCLNSLPNQPVNAFGCEADEDHDGVVDRLDQCHKTPIGISVNEVGCEGDADLDG
CCCCHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCHHH
IIDSLDQCPGTLPGVVVNKAGCRLDTDLDRDGVLNNKDQCPNTPIGVTVNQYGCEPKSLV
HHHHHHHCCCCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHH
VTNIVFDLGSYKIRPDQKPILDKDISQLRSLKDHERIVITGFTDSLGSESSNLKLSWNRA
HHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEECHH
QATKDYLVRKFKYDPASILVLGKGEANPVATNKTKEGRKQNRRISFMIMDQQIVPNEALA
HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHCCEEEEEEECCCCCCCHHHH
ALPDDMKHYNRYQE
HCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA