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The map label for this gene is rimN

Identifier: 78484365

GI number: 78484365

Start: 22708

End: 23268

Strand: Reverse

Name: rimN

Synonym: Tcr_0019

Alternate gene names: 78484365

Gene position: 23268-22708 (Counterclockwise)

Preceding gene: 78484372

Following gene: 78484363

Centisome position: 0.96

GC content: 46.88

Gene sequence:

>561_bases
GTGAATTGTCCCCTGTTAACGATAAAAGCGGCCGCTAAGTTGATTACAGAAGGCGGGGTGTTAGCGTATCCCACAGAAGC
GGTGTATGGATTGGGATGTGACCCGTTAAACAAGGACGCTTTTCAACAATTGCTGCGGTTAAAGCAGCGACCGCTAGAAA
AAGGTGTGATTTTGATTGCTTCAAGCATTGCGCAAATCGAACCGTTTGTAAAGTTACACAATCAGGCTTGGACAGAAAAG
GTTTTAGCCAGTTGGCAAGTACTGAATCAACCGGTTACTTGGGTGTTGCCAGCAACAGATAACGTGCCGGAATGGATTAC
GGGCGGTAGAAACACCGTTGCGGTTCGAGTTACTCAACACCCAGATGTGATGGCTTTATGTAACCAATTGAATTTTCCCA
TTGTGTCCACCAGTGCCAATTTGAGTGGTGAAGATCCGGTTACGACGATGGAGGCCTGTTGCAAGGCTTTTCCAGCATTG
GCGATTATGCAAGGTAACCTAATGGGCATTTCTGCCCCTTCTCAGATTTGGGAAGCACAAACGCAAAAGCGGTTACGTTA
A

Upstream 100 bases:

>100_bases
AAAACCCACCTCTGTCTAAAAATGGCCAGGCCTGGTCATTTTTGAATGCGGTTAAAGCAACTTTGTTAAAATACCTTTTC
ATTTTTTAAGGATTGATTGT

Downstream 100 bases:

>100_bases
GGTTGTTGAGTTTTTTGGTACAGCGGTTCCACTTTTTGAGCGTATCGTTTTAAATCATCAATTCGTGTTTCGTTGGAAGG
GTGTGTGCTTAAGAATTCAG

Product: SUA5/yciO/yrdC-like

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MNCPLLTIKAAAKLITEGGVLAYPTEAVYGLGCDPLNKDAFQQLLRLKQRPLEKGVILIASSIAQIEPFVKLHNQAWTEK
VLASWQVLNQPVTWVLPATDNVPEWITGGRNTVAVRVTQHPDVMALCNQLNFPIVSTSANLSGEDPVTTMEACCKAFPAL
AIMQGNLMGISAPSQIWEAQTQKRLR

Sequences:

>Translated_186_residues
MNCPLLTIKAAAKLITEGGVLAYPTEAVYGLGCDPLNKDAFQQLLRLKQRPLEKGVILIASSIAQIEPFVKLHNQAWTEK
VLASWQVLNQPVTWVLPATDNVPEWITGGRNTVAVRVTQHPDVMALCNQLNFPIVSTSANLSGEDPVTTMEACCKAFPAL
AIMQGNLMGISAPSQIWEAQTQKRLR
>Mature_186_residues
MNCPLLTIKAAAKLITEGGVLAYPTEAVYGLGCDPLNKDAFQQLLRLKQRPLEKGVILIASSIAQIEPFVKLHNQAWTEK
VLASWQVLNQPVTWVLPATDNVPEWITGGRNTVAVRVTQHPDVMALCNQLNFPIVSTSANLSGEDPVTTMEACCKAFPAL
AIMQGNLMGISAPSQIWEAQTQKRLR

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=182, Percent_Identity=42.8571428571429, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI87081864, Length=141, Percent_Identity=29.0780141843972, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_THICR (Q31JQ7)

Other databases:

- EMBL:   CP000109
- RefSeq:   YP_390290.1
- ProteinModelPortal:   Q31JQ7
- SMR:   Q31JQ7
- STRING:   Q31JQ7
- GeneID:   3760384
- GenomeReviews:   CP000109_GR
- KEGG:   tcx:Tcr_0019
- NMPDR:   fig|317025.3.peg.69
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   IAIRVTA
- PhylomeDB:   Q31JQ7
- BioCyc:   TCRU317025:TCR_0019-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 20319; Mature: 20319

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCPLLTIKAAAKLITEGGVLAYPTEAVYGLGCDPLNKDAFQQLLRLKQRPLEKGVILIA
CCCCEEHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCHHHHHHHHHHHHCCHHCCEEHHH
SSIAQIEPFVKLHNQAWTEKVLASWQVLNQPVTWVLPATDNVPEWITGGRNTVAVRVTQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCEEEEEEECC
PDVMALCNQLNFPIVSTSANLSGEDPVTTMEACCKAFPALAIMQGNLMGISAPSQIWEAQ
CCHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHH
TQKRLR
HHHCCC
>Mature Secondary Structure
MNCPLLTIKAAAKLITEGGVLAYPTEAVYGLGCDPLNKDAFQQLLRLKQRPLEKGVILIA
CCCCEEHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCHHHHHHHHHHHHCCHHCCEEHHH
SSIAQIEPFVKLHNQAWTEKVLASWQVLNQPVTWVLPATDNVPEWITGGRNTVAVRVTQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCEEEEEEECC
PDVMALCNQLNFPIVSTSANLSGEDPVTTMEACCKAFPALAIMQGNLMGISAPSQIWEAQ
CCHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHH
TQKRLR
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA