| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is ygfJ [C]
Identifier: 78358586
GI number: 78358586
Start: 3507700
End: 3508854
Strand: Direct
Name: ygfJ [C]
Synonym: Dde_3547
Alternate gene names: 78358586
Gene position: 3507700-3508854 (Clockwise)
Preceding gene: 78358585
Following gene: 78358589
Centisome position: 94.03
GC content: 65.71
Gene sequence:
>1155_bases ATGCCCCGCAGTTTATCCACCCCCGGCCTGCGTCAGCAGGATAACAGCGCGTGCCGGGGGCCCAAACCGGCCCCGCCTCC GGCGCTGTGTCTTCCCGCATGGCCGCCGCAGGACATCACAGGCCCGTTGCCGCGCATCGGCGGTATTATTCTGGCCGCAG GAGAATCATCACGCATGGGGCGGTGCAAAGCCATACTGCCCCTCGGCGGCAGCACCGTTCTGGAACAGACGGCGCTGGCG CTGGCAGCGGCCGTCACAGGCCCCGTGGTTGTCGTCTGCGGTCATCACGGCGATGCTGTCCGCGCCGAAGCCCGCCGCTG CGGTCTGACCGCCGTGACCAACCCGCATCCTGAAAACGGCATGTTTTCCTCTGTACAGTGCGGCATACAGGCCATTGTCT CTCACGTTGACGCGGCCTTTATTCTGCCCGTTGACACCCCGCTGGTGCGCGCGTCCACCTGCATGCTGCTTGCGGCCTCC TTTGTCCGGCAGGGGCACGCCGTCACGCTGCCTGTGGCATCGCCGCACCGCAGCCGCACGGGTCATCCGCCGCTGCTGCG CGCTGATGTGTTGCGCAGCGTACTGCGGCATGACGGCAAAGACGGACTGCGGGCCGTCATCCGGGCATTTGCAGACCTCG GCATGAACACCACGGTGCCCGTTGCCGATGAAGGCTGCCTGCGCGACATGGACACGCCCGAAGCATACAGGCTGGCCGTT GCGGCCTTCAGACGCAGGCACATCCCCACGGCAGGCGAAGTGCTGGCGCTGCTTGAGATTGCCGCAACGCCGCCCCATGT GCGCGCACACGGGGTACGCGTGGGACAGGCGGCCGCTCTGTTCGCCTGCCGGATGGTCAGCTGCGCCTCTCCGTCCGTTG AATCTCTGCCCGATGCCGGTCTTGCCCTTGCATCCGGTACCCTGCACGATATATTGAAGGGCTACAGGCAGCACGAAAAA GCCGGCGGAGCCATGCTGCGCCGGTACGGATTTGACGCCGCAGCGCGCATAGTGGCGGCCCACAGGGATACGGACCCCGC GCGGGTGCGCATACCCGGTGAACGCGAACTGGTCATGCTGGCGGATAAATACATACGGGGCACGACGCTGATTCCCATGG AAGAACGCTTTGACCAACGCATAGCAGGCCGTTGA
Upstream 100 bases:
>100_bases GCCTGGAAATCGGGGCACGCACTCCCGAAGAAATCGCCGTGAGCATCATGGCGGAAATCATCGCCTGCCGTGCCGCCGGC AACGGAGACGGAGCAAGCTG
Downstream 100 bases:
>100_bases AAAAGTCGATATTTCCGGTTTTCACACCAAAGACTTGCTCACCGCAGCAACTGGCATGAGATTGTTGGGGTGCTCCTCAT GTACCGCGAAAACGAGCAAT
Product: MobA-like protein-like
Products: NA
Alternate protein names: 4-Diphosphocytidyl-2C-Methyl-D-Erythritol Synthase; Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A; Molybdenum Hydroxylase Accessory Protein YgfJ Family; MobA-Like Protein-Like; 4-Diphosphocytidyl-2C-Methyl-D-Erythritolsynthas E; Molybdenum Cofactor Biosynthesis Protein; Metal-Dependent Phosphohydrolase HD Sub Domain Protein; HD Domain-Containing Protein; MobA-Like Protein; Regulatory Protein; Molybdopterin-Guanine Dinucleotide Biosynthesis Protein; MobA-Related Protein; Purine Catabolism Protein PucB; Phosphoglycerate/Bisphosphoglycerate Mutase; Domain HDIG Containing Protein; HD Domain Protein; Regulatory Protein LysR
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MPRSLSTPGLRQQDNSACRGPKPAPPPALCLPAWPPQDITGPLPRIGGIILAAGESSRMGRCKAILPLGGSTVLEQTALA LAAAVTGPVVVVCGHHGDAVRAEARRCGLTAVTNPHPENGMFSSVQCGIQAIVSHVDAAFILPVDTPLVRASTCMLLAAS FVRQGHAVTLPVASPHRSRTGHPPLLRADVLRSVLRHDGKDGLRAVIRAFADLGMNTTVPVADEGCLRDMDTPEAYRLAV AAFRRRHIPTAGEVLALLEIAATPPHVRAHGVRVGQAAALFACRMVSCASPSVESLPDAGLALASGTLHDILKGYRQHEK AGGAMLRRYGFDAAARIVAAHRDTDPARVRIPGERELVMLADKYIRGTTLIPMEERFDQRIAGR
Sequences:
>Translated_384_residues MPRSLSTPGLRQQDNSACRGPKPAPPPALCLPAWPPQDITGPLPRIGGIILAAGESSRMGRCKAILPLGGSTVLEQTALA LAAAVTGPVVVVCGHHGDAVRAEARRCGLTAVTNPHPENGMFSSVQCGIQAIVSHVDAAFILPVDTPLVRASTCMLLAAS FVRQGHAVTLPVASPHRSRTGHPPLLRADVLRSVLRHDGKDGLRAVIRAFADLGMNTTVPVADEGCLRDMDTPEAYRLAV AAFRRRHIPTAGEVLALLEIAATPPHVRAHGVRVGQAAALFACRMVSCASPSVESLPDAGLALASGTLHDILKGYRQHEK AGGAMLRRYGFDAAARIVAAHRDTDPARVRIPGERELVMLADKYIRGTTLIPMEERFDQRIAGR >Mature_383_residues PRSLSTPGLRQQDNSACRGPKPAPPPALCLPAWPPQDITGPLPRIGGIILAAGESSRMGRCKAILPLGGSTVLEQTALAL AAAVTGPVVVVCGHHGDAVRAEARRCGLTAVTNPHPENGMFSSVQCGIQAIVSHVDAAFILPVDTPLVRASTCMLLAASF VRQGHAVTLPVASPHRSRTGHPPLLRADVLRSVLRHDGKDGLRAVIRAFADLGMNTTVPVADEGCLRDMDTPEAYRLAVA AFRRRHIPTAGEVLALLEIAATPPHVRAHGVRVGQAAALFACRMVSCASPSVESLPDAGLALASGTLHDILKGYRQHEKA GGAMLRRYGFDAAARIVAAHRDTDPARVRIPGERELVMLADKYIRGTTLIPMEERFDQRIAGR
Specific function: Unknown
COG id: COG2068
COG function: function code R; Uncharacterized MobA-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40679; Mature: 40547
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRSLSTPGLRQQDNSACRGPKPAPPPALCLPAWPPQDITGPLPRIGGIILAAGESSRMG CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCEEEECCCCCCCC RCKAILPLGGSTVLEQTALALAAAVTGPVVVVCGHHGDAVRAEARRCGLTAVTNPHPENG CEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEEECCCCCCCC MFSSVQCGIQAIVSHVDAAFILPVDTPLVRASTCMLLAASFVRQGHAVTLPVASPHRSRT CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC GHPPLLRADVLRSVLRHDGKDGLRAVIRAFADLGMNTTVPVADEGCLRDMDTPEAYRLAV CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCHHHHHHH AAFRRRHIPTAGEVLALLEIAATPPHVRAHGVRVGQAAALFACRMVSCASPSVESLPDAG HHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCEEHHHHHHHHHHHHHHCCCCCHHHCCCCC LALASGTLHDILKGYRQHEKAGGAMLRRYGFDAAARIVAAHRDTDPARVRIPGERELVML HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEECCCCCEEEE ADKYIRGTTLIPMEERFDQRIAGR EHHHHCCCEECCHHHHHHHHHCCC >Mature Secondary Structure PRSLSTPGLRQQDNSACRGPKPAPPPALCLPAWPPQDITGPLPRIGGIILAAGESSRMG CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCEEEECCCCCCCC RCKAILPLGGSTVLEQTALALAAAVTGPVVVVCGHHGDAVRAEARRCGLTAVTNPHPENG CEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEEECCCCCCCC MFSSVQCGIQAIVSHVDAAFILPVDTPLVRASTCMLLAASFVRQGHAVTLPVASPHRSRT CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC GHPPLLRADVLRSVLRHDGKDGLRAVIRAFADLGMNTTVPVADEGCLRDMDTPEAYRLAV CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCHHHHHHH AAFRRRHIPTAGEVLALLEIAATPPHVRAHGVRVGQAAALFACRMVSCASPSVESLPDAG HHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCEEHHHHHHHHHHHHHHCCCCCHHHCCCCC LALASGTLHDILKGYRQHEKAGGAMLRRYGFDAAARIVAAHRDTDPARVRIPGERELVML HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEECCCCCEEEE ADKYIRGTTLIPMEERFDQRIAGR EHHHHCCCEECCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA