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The map label for this gene is xerC [H]

Identifier: 78358438

GI number: 78358438

Start: 3362885

End: 3364108

Strand: Direct

Name: xerC [H]

Synonym: Dde_3398

Alternate gene names: 78358438

Gene position: 3362885-3364108 (Clockwise)

Preceding gene: 78358437

Following gene: 78358439

Centisome position: 90.15

GC content: 47.71

Gene sequence:

>1224_bases
TTGCAAAACTGGCACAAAACTGGCACAGATTTTTTAGGCATATGTGCCTGGGAGGCTGTGATGACAAAAACAAATTGGAT
CAAGATTGATCGAGGTATCCGCTATAAAGAACACCCCACACGAAAACACGGGGTCAAGCCAGACAGATATTTTGTGCTGC
GTCACTCGTCAGAAGGCAAAATGCACCAAGAAGCTCTAGGCTGGGCATCTGAAGGAGTAACGCTTGAAAAAGCCAGAATA
AGACTTGCAGAACTAAAAGAGGCTAAGCGCACAGGCAGGGGCGCCACAACTCTTGCCAGCCAAAGACGGGCTCTACGTGA
GGAAGAGGAACGAAATAAACAAGCGCAACAAGCGGCTAAAGCCAGATTCATAACCTCAGGTTCATTTTGGCATGAATATT
ACTGGCCGAGCCAGAGCCATAAAGCGCAAGGCAGCCTCGACGCCGAAAAAGCACTATGGGAAAAATGGCTCTGCCCCATC
ATAGGGCAAATTCCACTGGCCACAACCACGACAAAAGATCTGGAAGAAGTGAAAAGACGGATGATGAAAGCAGGGCGTGC
CCCTGCTACCATCAAATATGCCTTAGCACTGTTCTCTCAGATGTGGACTCTAGCCCAGAACTACGGGATAGCAGACGGCA
CATGTCCTGCAAAAAGGCTCAAGCTCCCCGCAAGAGATAACAAGAGACAGCGCTACTTGAAGCCAGCTGAAATAGACACA
CTCCTTTCGGCCTTACGGGATAAGTCGCAAAAGACGCACGACATAGCTCTCCTGTCACTGGAGTGCGGCCTTCGCTTTGG
AGAAATCGCCAACCTGCGTTGGGAAGATGTTGACCTTGAACATGAAAGACTATTTATCCGCGATCCAAAATCACGAAGGA
ACAGATTCACATACATAAACCAAACGATACGCAGCATGTTATTACTAAATAGACCAGATCGAGCTGGAGATCTAATTTTT
CCTGACTATGAAGGCAAACCCATGGCAAGAGTTTCCAAAACATTCGGACGTGTTGCTGATGAGCTCTTCAATTCGGATGT
AACGGACACCAGAAACCGGGTATGTTTTCATACGTTACGACATACGTTTGCATCGCGACTTGTCGCCAATGGAACTCCGC
TTTATAATGTCAAAGAGCTGTTAGGACATTCATCACTTGCCATGACGGAGCGGTATGCACACCTTGCTCCCGACTATTAC
AAAGCACTGAGCACCAAGGAATAG

Upstream 100 bases:

>100_bases
TGAACTCAGGTGATATCTAGAAAACAACATATTCCATAAAAAAAAGTGTATTAGACAAGCCACTCTTCACTATCCCAGCC
TACACTTCACTCAGCTTCTC

Downstream 100 bases:

>100_bases
ATTATGCAAAAAGATGACCTTCAAGACACAGGAGTGTCTGAGCTTACAGATCACAAATCAAATGAAACCAAAAGCTACCT
GCGCAAGGCAAAAAAGGAGG

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MQNWHKTGTDFLGICAWEAVMTKTNWIKIDRGIRYKEHPTRKHGVKPDRYFVLRHSSEGKMHQEALGWASEGVTLEKARI
RLAELKEAKRTGRGATTLASQRRALREEEERNKQAQQAAKARFITSGSFWHEYYWPSQSHKAQGSLDAEKALWEKWLCPI
IGQIPLATTTTKDLEEVKRRMMKAGRAPATIKYALALFSQMWTLAQNYGIADGTCPAKRLKLPARDNKRQRYLKPAEIDT
LLSALRDKSQKTHDIALLSLECGLRFGEIANLRWEDVDLEHERLFIRDPKSRRNRFTYINQTIRSMLLLNRPDRAGDLIF
PDYEGKPMARVSKTFGRVADELFNSDVTDTRNRVCFHTLRHTFASRLVANGTPLYNVKELLGHSSLAMTERYAHLAPDYY
KALSTKE

Sequences:

>Translated_407_residues
MQNWHKTGTDFLGICAWEAVMTKTNWIKIDRGIRYKEHPTRKHGVKPDRYFVLRHSSEGKMHQEALGWASEGVTLEKARI
RLAELKEAKRTGRGATTLASQRRALREEEERNKQAQQAAKARFITSGSFWHEYYWPSQSHKAQGSLDAEKALWEKWLCPI
IGQIPLATTTTKDLEEVKRRMMKAGRAPATIKYALALFSQMWTLAQNYGIADGTCPAKRLKLPARDNKRQRYLKPAEIDT
LLSALRDKSQKTHDIALLSLECGLRFGEIANLRWEDVDLEHERLFIRDPKSRRNRFTYINQTIRSMLLLNRPDRAGDLIF
PDYEGKPMARVSKTFGRVADELFNSDVTDTRNRVCFHTLRHTFASRLVANGTPLYNVKELLGHSSLAMTERYAHLAPDYY
KALSTKE
>Mature_407_residues
MQNWHKTGTDFLGICAWEAVMTKTNWIKIDRGIRYKEHPTRKHGVKPDRYFVLRHSSEGKMHQEALGWASEGVTLEKARI
RLAELKEAKRTGRGATTLASQRRALREEEERNKQAQQAAKARFITSGSFWHEYYWPSQSHKAQGSLDAEKALWEKWLCPI
IGQIPLATTTTKDLEEVKRRMMKAGRAPATIKYALALFSQMWTLAQNYGIADGTCPAKRLKLPARDNKRQRYLKPAEIDT
LLSALRDKSQKTHDIALLSLECGLRFGEIANLRWEDVDLEHERLFIRDPKSRRNRFTYINQTIRSMLLLNRPDRAGDLIF
PDYEGKPMARVSKTFGRVADELFNSDVTDTRNRVCFHTLRHTFASRLVANGTPLYNVKELLGHSSLAMTERYAHLAPDYY
KALSTKE

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46948; Mature: 46948

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNWHKTGTDFLGICAWEAVMTKTNWIKIDRGIRYKEHPTRKHGVKPDRYFVLRHSSEGK
CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHCCCCCCEEEEEEECCCCC
MHQEALGWASEGVTLEKARIRLAELKEAKRTGRGATTLASQRRALREEEERNKQAQQAAK
HHHHHHCHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARFITSGSFWHEYYWPSQSHKAQGSLDAEKALWEKWLCPIIGQIPLATTTTKDLEEVKRR
HHEEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
MMKAGRAPATIKYALALFSQMWTLAQNYGIADGTCPAKRLKLPARDNKRQRYLKPAEIDT
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHCCCHHHHHH
LLSALRDKSQKTHDIALLSLECGLRFGEIANLRWEDVDLEHERLFIRDPKSRRNRFTYIN
HHHHHHHCCCCCHHEEEEEHHCCCCCCHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
QTIRSMLLLNRPDRAGDLIFPDYEGKPMARVSKTFGRVADELFNSDVTDTRNRVCFHTLR
HHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
HTFASRLVANGTPLYNVKELLGHSSLAMTERYAHLAPDYYKALSTKE
HHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCHHHHHHHCCCC
>Mature Secondary Structure
MQNWHKTGTDFLGICAWEAVMTKTNWIKIDRGIRYKEHPTRKHGVKPDRYFVLRHSSEGK
CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHCCCCCCEEEEEEECCCCC
MHQEALGWASEGVTLEKARIRLAELKEAKRTGRGATTLASQRRALREEEERNKQAQQAAK
HHHHHHCHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARFITSGSFWHEYYWPSQSHKAQGSLDAEKALWEKWLCPIIGQIPLATTTTKDLEEVKRR
HHEEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
MMKAGRAPATIKYALALFSQMWTLAQNYGIADGTCPAKRLKLPARDNKRQRYLKPAEIDT
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHCCCHHHHHH
LLSALRDKSQKTHDIALLSLECGLRFGEIANLRWEDVDLEHERLFIRDPKSRRNRFTYIN
HHHHHHHCCCCCHHEEEEEHHCCCCCCHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
QTIRSMLLLNRPDRAGDLIFPDYEGKPMARVSKTFGRVADELFNSDVTDTRNRVCFHTLR
HHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
HTFASRLVANGTPLYNVKELLGHSSLAMTERYAHLAPDYYKALSTKE
HHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA