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The map label for this gene is ihfB [H]

Identifier: 78358396

GI number: 78358396

Start: 3331388

End: 3331675

Strand: Direct

Name: ihfB [H]

Synonym: Dde_3356

Alternate gene names: 78358396

Gene position: 3331388-3331675 (Clockwise)

Preceding gene: 78358395

Following gene: 78358397

Centisome position: 89.31

GC content: 56.94

Gene sequence:

>288_bases
ATGACAAAGGCAGAACTCGAAATGGCTGTGGTTGAAGTGCTTGCACTCAATGGCATTAAGGCAACCCATAAAGCCGTCGC
AGACGTGATCAGCGCTACCCTCGACGTTATTACCGGTGAGCTGGCAGGAGGCGACCCTGTCAGGCTCACCGGCTTCGGGG
CATTCAAGGTCACCCGCCGGACCGCCCGGATAGGCCGTAACCCTAAGACAGGAGAGCCTGTCGAAATTCCGGCCAGTACC
GGTGTGAAGTTCAGTCCCGGCAAAACGTTGAAAGAGGCCCTGAACTGA

Upstream 100 bases:

>100_bases
CCTAAGTTCAGCGTGCCGGCTGACTACGCCGAGGCGGAAGTCCAGACCATACGGCGACCGGATTTTCATCTCGGATTTTA
ACCCTCCAAGGAAAGACAAC

Downstream 100 bases:

>100_bases
CCAAAGTCAGTGATGCGAAACCGTCCTCCGTGCGGGAGCGGAGGCGGTCGTCCGGCGGTGGCGCGTCGGACCTGATGAGC
AGCCAAGCTAAATGAGAAAC

Product: histone-like DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRRTARIGRNPKTGEPVEIPAST
GVKFSPGKTLKEALN

Sequences:

>Translated_95_residues
MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRRTARIGRNPKTGEPVEIPAST
GVKFSPGKTLKEALN
>Mature_94_residues
TKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRRTARIGRNPKTGEPVEIPASTG
VKFSPGKTLKEALN

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=95, Percent_Identity=37.8947368421053, Blast_Score=65, Evalue=6e-13,
Organism=Escherichia coli, GI1790433, Length=65, Percent_Identity=47.6923076923077, Blast_Score=64, Evalue=3e-12,
Organism=Escherichia coli, GI1786644, Length=78, Percent_Identity=41.025641025641, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 9901; Mature: 9769

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHH
TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN
HHHCCCCCCCCCCEECCCCCCCEECCCHHHHHHCC
>Mature Secondary Structure 
TKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHH
TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN
HHHCCCCCCCCCCEECCCCCCCEECCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA