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The map label for this gene is yvrB [H]

Identifier: 78358144

GI number: 78358144

Start: 3094752

End: 3095831

Strand: Direct

Name: yvrB [H]

Synonym: Dde_3104

Alternate gene names: 78358144

Gene position: 3094752-3095831 (Clockwise)

Preceding gene: 78358143

Following gene: 78358145

Centisome position: 82.96

GC content: 65.37

Gene sequence:

>1080_bases
ATGAACAGGGCCGGAAACACCGTAACACGCCGCACGCTCCGCCCGGTGCTGTGCTGTGCCGCCGCGTCGGCCGCCTGTGC
GGTTTCGGTGTTTCTGGCCTGTTACGCGGGGGCGTTTCCCGTGGCGTTTGCCGACGTGACGGCCGTGCTGCTGCATGCCG
CCGGTCTGGGCCCCCTGCCCGCAGCCGCGCAGGATAATCCCGCCCTGACCGTTGTGGTGCTTGAGCTGCGTCTGGGCCGC
GTGGTGCTTTCGCTGCTGGTGGGCGCTTCGCTGGCGGTGGCAGGCACGGTGTATCAGGGGCTGCTGCGCAACCCTCTGGC
CGATCCTTTCACGCTGGGCGTTTCGTCCGGAGCCGCTTTCGGCGCATCCGTGGCACTTTTCTGGGGGCTGGGCACCATGG
CCCTGCCGTTTTTTCCCGCTGCGGGAATACTGCCCGCCGCGGCCCTGACCGGCGCCACCGCGGCGCTGGCGGCCGTGCTT
GTACTGGGTCGCGTGGGCGGCATCATGCGCCGCGAAACGCTGGTACTTGCGGGTATTGTGGTTTCCACGTTCCTTTCCGC
TCTCATATCGCTGGTCAAATCACTGGACGAAGAATCGGTGGCAAGCATCGTATTCTGGATAATGGGCAGTCTGCAGGGCC
GCGGCTGGCATGAGGTCATGCTTTTCACGCCGTGGTTTGTGCTGGGTATGCTGCCCGTCATCCGTTTTTCGCGCGAGCTT
GATATTCTGTCGCTGGGCGACGTGCAGGCACGTCAGCTGGGCATGGATGCTTCACGCGTACGGTTGTGGCTGCTGCTGGG
AGCAGGAGCGCTTACGGGCGTCTCCGTGGCTGTCAGCGGGGTGATAGGATTTGTGGGGCTGGTTGTGCCGCATCTGGTAC
GTATGGTCATAGGCGCCGAGCACCGGCCTCTGCTGGCGGTCAGCGCGCTGACAGGCGGTCTTTTGCTGCTCTGGTCCGAC
GTGCTGGCCCGCACCCTGCTTTCCGGCGGGGCCGAACTGCCCGTGGGAGTGGTCACCGCGCTGCTGGGGGGCCCTTTTTT
CTGCCTGCTGCTGCGGCGCAATACAGGAACAGCCCTATGA

Upstream 100 bases:

>100_bases
TCACCCCCGTACCCGTGGTGAAAGGCATGGCAGCTGTGCCCGCCATCCGCGCCATATGGGTTGAGCACCTTAAAGAAGCC
TACAACCGGCTGGATGACTG

Downstream 100 bases:

>100_bases
TACGCCTGCGCAATGCCACACTGGGCCACGGTACAACGCCCGTGCTGCACAACATCTCCCTGCATATCAGACAGGGTGAA
ATGACAGGTCTGCTCGGCCC

Product: iron compound ABC transporter permease

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MNRAGNTVTRRTLRPVLCCAAASAACAVSVFLACYAGAFPVAFADVTAVLLHAAGLGPLPAAAQDNPALTVVVLELRLGR
VVLSLLVGASLAVAGTVYQGLLRNPLADPFTLGVSSGAAFGASVALFWGLGTMALPFFPAAGILPAAALTGATAALAAVL
VLGRVGGIMRRETLVLAGIVVSTFLSALISLVKSLDEESVASIVFWIMGSLQGRGWHEVMLFTPWFVLGMLPVIRFSREL
DILSLGDVQARQLGMDASRVRLWLLLGAGALTGVSVAVSGVIGFVGLVVPHLVRMVIGAEHRPLLAVSALTGGLLLLWSD
VLARTLLSGGAELPVGVVTALLGGPFFCLLLRRNTGTAL

Sequences:

>Translated_359_residues
MNRAGNTVTRRTLRPVLCCAAASAACAVSVFLACYAGAFPVAFADVTAVLLHAAGLGPLPAAAQDNPALTVVVLELRLGR
VVLSLLVGASLAVAGTVYQGLLRNPLADPFTLGVSSGAAFGASVALFWGLGTMALPFFPAAGILPAAALTGATAALAAVL
VLGRVGGIMRRETLVLAGIVVSTFLSALISLVKSLDEESVASIVFWIMGSLQGRGWHEVMLFTPWFVLGMLPVIRFSREL
DILSLGDVQARQLGMDASRVRLWLLLGAGALTGVSVAVSGVIGFVGLVVPHLVRMVIGAEHRPLLAVSALTGGLLLLWSD
VLARTLLSGGAELPVGVVTALLGGPFFCLLLRRNTGTAL
>Mature_359_residues
MNRAGNTVTRRTLRPVLCCAAASAACAVSVFLACYAGAFPVAFADVTAVLLHAAGLGPLPAAAQDNPALTVVVLELRLGR
VVLSLLVGASLAVAGTVYQGLLRNPLADPFTLGVSSGAAFGASVALFWGLGTMALPFFPAAGILPAAALTGATAALAAVL
VLGRVGGIMRRETLVLAGIVVSTFLSALISLVKSLDEESVASIVFWIMGSLQGRGWHEVMLFTPWFVLGMLPVIRFSREL
DILSLGDVQARQLGMDASRVRLWLLLGAGALTGVSVAVSGVIGFVGLVVPHLVRMVIGAEHRPLLAVSALTGGLLLLWSD
VLARTLLSGGAELPVGVVTALLGGPFFCLLLRRNTGTAL

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=282, Percent_Identity=41.4893617021277, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1790741, Length=346, Percent_Identity=36.9942196531792, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1788004, Length=297, Percent_Identity=38.3838383838384, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1786805, Length=286, Percent_Identity=37.0629370629371, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1786347, Length=292, Percent_Identity=34.2465753424658, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1786804, Length=350, Percent_Identity=31.1428571428571, Blast_Score=96, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 36891; Mature: 36891

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRAGNTVTRRTLRPVLCCAAASAACAVSVFLACYAGAFPVAFADVTAVLLHAAGLGPLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
AAAQDNPALTVVVLELRLGRVVLSLLVGASLAVAGTVYQGLLRNPLADPFTLGVSSGAAF
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHH
GASVALFWGLGTMALPFFPAAGILPAAALTGATAALAAVLVLGRVGGIMRRETLVLAGIV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSTFLSALISLVKSLDEESVASIVFWIMGSLQGRGWHEVMLFTPWFVLGMLPVIRFSREL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
DILSLGDVQARQLGMDASRVRLWLLLGAGALTGVSVAVSGVIGFVGLVVPHLVRMVIGAE
CEEECCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HRPLLAVSALTGGLLLLWSDVLARTLLSGGAELPVGVVTALLGGPFFCLLLRRNTGTAL
CCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHEEEEEECCCCCCC
>Mature Secondary Structure
MNRAGNTVTRRTLRPVLCCAAASAACAVSVFLACYAGAFPVAFADVTAVLLHAAGLGPLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
AAAQDNPALTVVVLELRLGRVVLSLLVGASLAVAGTVYQGLLRNPLADPFTLGVSSGAAF
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHH
GASVALFWGLGTMALPFFPAAGILPAAALTGATAALAAVLVLGRVGGIMRRETLVLAGIV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSTFLSALISLVKSLDEESVASIVFWIMGSLQGRGWHEVMLFTPWFVLGMLPVIRFSREL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
DILSLGDVQARQLGMDASRVRLWLLLGAGALTGVSVAVSGVIGFVGLVVPHLVRMVIGAE
CEEECCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HRPLLAVSALTGGLLLLWSDVLARTLLSGGAELPVGVVTALLGGPFFCLLLRRNTGTAL
CCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]