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The map label for this gene is rpfG [H]

Identifier: 78358116

GI number: 78358116

Start: 3065601

End: 3066617

Strand: Direct

Name: rpfG [H]

Synonym: Dde_3076

Alternate gene names: 78358116

Gene position: 3065601-3066617 (Clockwise)

Preceding gene: 78358115

Following gene: 78358117

Centisome position: 82.18

GC content: 55.46

Gene sequence:

>1017_bases
ATGCAATCCACAGCCAGCCACACAAAAGCGCCCGGAAAATCACACCCGGTTGTCACCGAAGATCAATACTTCAGTGTCTC
TCCTCTTATGCTTCTTGCAGACAACGCCGCACTGTTCAGTGTTTATCTGCGACAGGGCAACAACTTTGTATTGTACACAC
ACGCCGGTGAAATGTTCACACACCGGCACAAACAACGGCTGGCCGAAAACGGTGTTACGGAAGTATGGCTGAAAGAAAGC
CAGCGCCATGCATACACGGCACATGTGGAACAGCATCTCGGCAATGTGCTTGCAGACGATTCACTGCCCGCAGAAGCACG
GGCCGGTGCCCTGTACGGCATAGCCTCCGACGCACTGCAGGATGTGTTTGCACAGCACGGCGCCGGAGCATTGCCGGCGG
ACACCGCCCGGCGGGCCCGGCAACTTGTGGAGCATATCATCTCCTTTCTCAAAGTGCCCAACGGTATAACGGCGCTGGGC
AGATTCATCGCCCATGATTATCACTCGTGGACACACAGCCTGAACACCACGTTCTACACGCTGGGCATTCTGCAGTCTTA
CGGGCTGCCCGATGAAAGCATGGCACATATAGGTCTTGGCGCCATGCTGCACGACATCGGCAAAGCCGAGATACCTTCTT
CTATACTGCTGAAGCCCGGCCCTCTCACCGCTTCCGAACGACAATGCATCAACACGCATCCGCTTATGGGAGTTGCGCGG
CTGGCACAGACCGAACTGCCGCAGACAACACTCAACTGCATCCTCTTTCATCATGAAAAACTGGACGGCTCGGGGTATCC
TTCAGGAATCGGCGGTACGGCCATTCCGCTTGCAGTCCGCGCAGTGACCGTTGCAGACATATACGACGCGCTCGCATCTG
AAAGACCCTATGCCGCGGCCCGTCCGCCCTTTGCGGTGCTGCAGCTGATGCGCGGAGAAATGGCTGATGAACTGGACATG
GATGTTTTCAAAAACTTTGTGCTCATGCTGAGCAATGCCGGTCTGACTAAAACATAA

Upstream 100 bases:

>100_bases
AAAACTGTATCCGCACAGTCTGTATAGCCGACTGCAACATACGGCCATCTCACAATTTTAACTTTTCTTCATAATCCGGT
TACTGTATAAACACTCCGTC

Downstream 100 bases:

>100_bases
GAGCCGCTGCAATATGTTGTCTGTCTTTTTGCAGCTGATGCTATTGACATAACACCACTATAATTTCTAGAGTTCTTCTA
GTAACATTTTTGCGGACCGT

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MQSTASHTKAPGKSHPVVTEDQYFSVSPLMLLADNAALFSVYLRQGNNFVLYTHAGEMFTHRHKQRLAENGVTEVWLKES
QRHAYTAHVEQHLGNVLADDSLPAEARAGALYGIASDALQDVFAQHGAGALPADTARRARQLVEHIISFLKVPNGITALG
RFIAHDYHSWTHSLNTTFYTLGILQSYGLPDESMAHIGLGAMLHDIGKAEIPSSILLKPGPLTASERQCINTHPLMGVAR
LAQTELPQTTLNCILFHHEKLDGSGYPSGIGGTAIPLAVRAVTVADIYDALASERPYAAARPPFAVLQLMRGEMADELDM
DVFKNFVLMLSNAGLTKT

Sequences:

>Translated_338_residues
MQSTASHTKAPGKSHPVVTEDQYFSVSPLMLLADNAALFSVYLRQGNNFVLYTHAGEMFTHRHKQRLAENGVTEVWLKES
QRHAYTAHVEQHLGNVLADDSLPAEARAGALYGIASDALQDVFAQHGAGALPADTARRARQLVEHIISFLKVPNGITALG
RFIAHDYHSWTHSLNTTFYTLGILQSYGLPDESMAHIGLGAMLHDIGKAEIPSSILLKPGPLTASERQCINTHPLMGVAR
LAQTELPQTTLNCILFHHEKLDGSGYPSGIGGTAIPLAVRAVTVADIYDALASERPYAAARPPFAVLQLMRGEMADELDM
DVFKNFVLMLSNAGLTKT
>Mature_338_residues
MQSTASHTKAPGKSHPVVTEDQYFSVSPLMLLADNAALFSVYLRQGNNFVLYTHAGEMFTHRHKQRLAENGVTEVWLKES
QRHAYTAHVEQHLGNVLADDSLPAEARAGALYGIASDALQDVFAQHGAGALPADTARRARQLVEHIISFLKVPNGITALG
RFIAHDYHSWTHSLNTTFYTLGILQSYGLPDESMAHIGLGAMLHDIGKAEIPSSILLKPGPLTASERQCINTHPLMGVAR
LAQTELPQTTLNCILFHHEKLDGSGYPSGIGGTAIPLAVRAVTVADIYDALASERPYAAARPPFAVLQLMRGEMADELDM
DVFKNFVLMLSNAGLTKT

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 36742; Mature: 36742

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSTASHTKAPGKSHPVVTEDQYFSVSPLMLLADNAALFSVYLRQGNNFVLYTHAGEMFT
CCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEECCCHHHH
HRHKQRLAENGVTEVWLKESQRHAYTAHVEQHLGNVLADDSLPAEARAGALYGIASDALQ
HHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHH
DVFAQHGAGALPADTARRARQLVEHIISFLKVPNGITALGRFIAHDYHSWTHSLNTTFYT
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
LGILQSYGLPDESMAHIGLGAMLHDIGKAEIPSSILLKPGPLTASERQCINTHPLMGVAR
HHHHHHCCCCCHHHHHHHHHHHHHHHCHHCCCCCCEECCCCCCCCCCHHCCCCCHHHHHH
LAQTELPQTTLNCILFHHEKLDGSGYPSGIGGTAIPLAVRAVTVADIYDALASERPYAAA
HHHHHCCHHHHHHHHEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
RPPFAVLQLMRGEMADELDMDVFKNFVLMLSNAGLTKT
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQSTASHTKAPGKSHPVVTEDQYFSVSPLMLLADNAALFSVYLRQGNNFVLYTHAGEMFT
CCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEECCCHHHH
HRHKQRLAENGVTEVWLKESQRHAYTAHVEQHLGNVLADDSLPAEARAGALYGIASDALQ
HHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHH
DVFAQHGAGALPADTARRARQLVEHIISFLKVPNGITALGRFIAHDYHSWTHSLNTTFYT
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
LGILQSYGLPDESMAHIGLGAMLHDIGKAEIPSSILLKPGPLTASERQCINTHPLMGVAR
HHHHHHCCCCCHHHHHHHHHHHHHHHCHHCCCCCCEECCCCCCCCCCHHCCCCCHHHHHH
LAQTELPQTTLNCILFHHEKLDGSGYPSGIGGTAIPLAVRAVTVADIYDALASERPYAAA
HHHHHCCHHHHHHHHEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
RPPFAVLQLMRGEMADELDMDVFKNFVLMLSNAGLTKT
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]