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The map label for this gene is rbn [C]

Identifier: 78358104

GI number: 78358104

Start: 3056564

End: 3057985

Strand: Reverse

Name: rbn [C]

Synonym: Dde_3064

Alternate gene names: 78358104

Gene position: 3057985-3056564 (Counterclockwise)

Preceding gene: 78358109

Following gene: 78358096

Centisome position: 81.98

GC content: 58.16

Gene sequence:

>1422_bases
GTGTGCAGCGTCATGAAACGTGATATGGGAACCGAACAGTTGCAGGAGCGTGCCGGAAGGCTGGTGCGTTTTGTCACGCG
GGATATCTGGTTGCAGGATATGGAAAAAGCCCGGGGCAGGCGCAGGGGGATTCTGGGTGTGCTGCGCTGGCTGTATCTGG
TGGTGCACGGTTTTGTGGCCGACCAGTGCCTGCTGCGCGCTTCTGCGCTTACCTACACCACGGTGCTTTCCATCGTGCCC
ACGCTGGCGGTGGCGTTTTCCATTTCCAAGGGGCTGGGCATCCAGAATACCGAGTTCATCAGAGTGCTGCTGATGCGCAT
AGCCGCAGGCAGAGAAGACACCGTGACCCAGATTCTGGCCTATGTGGACAATACCAACGTGAAAACGCTGGGGGCCGTGG
GGCTGCTTGCGCTGTTCGTCACGGTGGGGTCGCTCATGGGCACCATTGAAAAGGCGTTCAACTCCATCTGGGGTGTGGCC
AGAGGCCGTACTCTGTGGCGCAAGTTCACGGACTTTTTTTCTGTGACTCTGGTCTGTCCCATTGTCATGGCGGCGGCTTT
TTCGTTTTCTGTTTCGTTGCGGCACGAAACGCTGGTGCAGAAGCTGCTCAATGTAGGCATTGTCAGCTACGCTTATGTGG
CGTTTCTCAAGATGGTGCCTTTTCTGATGATCGCCCTGATGCTGTTTTTTATCTATGTGTTCATTCCCAACACGCGGGTG
CGCTTCGGCAGTGCGCTGCTGGGCGGGCTGGTGGCGGGGCTGCTGTGGACTCTGGCAGAAGGAGCCTATGTGGGCTACCA
GATAGGCGCGGCCAGATACAATGCCATCTACGGCGGTTTTGCGCAGCTGCCGCTTTTTCTCATCTGGGTGTACGTGACAT
GGGTGATTGTGCTGCTGGGGGCGGAGGTCAGCTTTGCCGTGCAGAATGTACGTACCTTTGAAAGTGAAATACGGGCCGAT
ACGGCCAGCCGTGAAGAACGGGATAAACTTGCGGTGCTGGTCATGCTGGCGCTGACAAGGGCTTTTTACGCCACGGCCGG
TCCTGTGCCGCTGGACAGGCTGTGCATGGTCGCGCGTGCTCCTGTGCGTCTGGTGCAGGATACGCTGGCTGCCATGGAGC
GCGTTTCTCTGGTGGTGGGAACCGAAGGCGACGACCCGCGTTATGCGCTGACAGCCCCGCCCGAATCAATCCGTGTCATG
GACATACTGCTGGCGCTGGCCAGTCACAAAGTTACGGGCGACAGGCCGCCGGTGACAGAAGATTTTCCTTTTGTGGATGC
CGTGTTCCGCAGGTTTTACGAGGCTTCGGCAGCCAGCACGGGTAATCTTTCACTGAAAGAGTTTCACGACGGGCATCTGC
CGGACAGCTTTGCCGCGGAACTTGTGCTTCCTGAACGCGGTTCTGTTGTGCAGGGGGGCTGA

Upstream 100 bases:

>100_bases
CATTGTATGATTCCTGTAAATTCTGATTTATAGAGTCGTGTACTGTCTATACTACGCCGCCCGCGCTTTTATCGCAACGG
GTACCGCAAAGGGAAATACG

Downstream 100 bases:

>100_bases
CGGGGCCGGAAACGGCAGATCAGTGCGGTGTCTCTGGCTGCGGAGCAAACGGCGAACAGGGATCGGTGAAGCAGTCAAAT
GCGGTCCGGGCTTCGGGCGT

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MCSVMKRDMGTEQLQERAGRLVRFVTRDIWLQDMEKARGRRRGILGVLRWLYLVVHGFVADQCLLRASALTYTTVLSIVP
TLAVAFSISKGLGIQNTEFIRVLLMRIAAGREDTVTQILAYVDNTNVKTLGAVGLLALFVTVGSLMGTIEKAFNSIWGVA
RGRTLWRKFTDFFSVTLVCPIVMAAAFSFSVSLRHETLVQKLLNVGIVSYAYVAFLKMVPFLMIALMLFFIYVFIPNTRV
RFGSALLGGLVAGLLWTLAEGAYVGYQIGAARYNAIYGGFAQLPLFLIWVYVTWVIVLLGAEVSFAVQNVRTFESEIRAD
TASREERDKLAVLVMLALTRAFYATAGPVPLDRLCMVARAPVRLVQDTLAAMERVSLVVGTEGDDPRYALTAPPESIRVM
DILLALASHKVTGDRPPVTEDFPFVDAVFRRFYEASAASTGNLSLKEFHDGHLPDSFAAELVLPERGSVVQGG

Sequences:

>Translated_473_residues
MCSVMKRDMGTEQLQERAGRLVRFVTRDIWLQDMEKARGRRRGILGVLRWLYLVVHGFVADQCLLRASALTYTTVLSIVP
TLAVAFSISKGLGIQNTEFIRVLLMRIAAGREDTVTQILAYVDNTNVKTLGAVGLLALFVTVGSLMGTIEKAFNSIWGVA
RGRTLWRKFTDFFSVTLVCPIVMAAAFSFSVSLRHETLVQKLLNVGIVSYAYVAFLKMVPFLMIALMLFFIYVFIPNTRV
RFGSALLGGLVAGLLWTLAEGAYVGYQIGAARYNAIYGGFAQLPLFLIWVYVTWVIVLLGAEVSFAVQNVRTFESEIRAD
TASREERDKLAVLVMLALTRAFYATAGPVPLDRLCMVARAPVRLVQDTLAAMERVSLVVGTEGDDPRYALTAPPESIRVM
DILLALASHKVTGDRPPVTEDFPFVDAVFRRFYEASAASTGNLSLKEFHDGHLPDSFAAELVLPERGSVVQGG
>Mature_473_residues
MCSVMKRDMGTEQLQERAGRLVRFVTRDIWLQDMEKARGRRRGILGVLRWLYLVVHGFVADQCLLRASALTYTTVLSIVP
TLAVAFSISKGLGIQNTEFIRVLLMRIAAGREDTVTQILAYVDNTNVKTLGAVGLLALFVTVGSLMGTIEKAFNSIWGVA
RGRTLWRKFTDFFSVTLVCPIVMAAAFSFSVSLRHETLVQKLLNVGIVSYAYVAFLKMVPFLMIALMLFFIYVFIPNTRV
RFGSALLGGLVAGLLWTLAEGAYVGYQIGAARYNAIYGGFAQLPLFLIWVYVTWVIVLLGAEVSFAVQNVRTFESEIRAD
TASREERDKLAVLVMLALTRAFYATAGPVPLDRLCMVARAPVRLVQDTLAAMERVSLVVGTEGDDPRYALTAPPESIRVM
DILLALASHKVTGDRPPVTEDFPFVDAVFRRFYEASAASTGNLSLKEFHDGHLPDSFAAELVLPERGSVVQGG

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=305, Percent_Identity=29.1803278688525, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 52188; Mature: 52188

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHEECCCCCCCCCCC
>Mature Secondary Structure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CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA