| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
Click here to switch to the map view.
The map label for this gene is yhjX [C]
Identifier: 78358093
GI number: 78358093
Start: 3042975
End: 3044282
Strand: Direct
Name: yhjX [C]
Synonym: Dde_3053
Alternate gene names: 78358093
Gene position: 3042975-3044282 (Clockwise)
Preceding gene: 78358092
Following gene: 78358094
Centisome position: 81.58
GC content: 54.05
Gene sequence:
>1308_bases GTGGGCAAAAGCAAAAATTTTTATGGTTGGTCAGTGGTTGCAGCCTCTTGGCTGGCCATGTTCTGTCTGTTTGGCTATCG GGCTACCTTCTCAATTCTCAAAGTTCCTATGAGCGCTGACATGGGATGGTCTCAGGCCGAGGTTACTCTGGGCTATTCCT TCATGATGATGTTTTATGCCATTGCCGCCTTCTTCTGTGGCATGATCCTCGATAAGTGGGGAACCAAGCCTGTCTACTTT ATCGGAGCCATCCTCGGCGCTTCCGGCTTCTATGTTACCAGCCTGACCCAGAGCCTTTATGCCTACTACGCCTCCTACGG CATCCTTGCCGGGGTCGCCACAGGAATGCTGTGGGTTTCATCTACCATCTCTATCCGCAAGTGGTATGTGGGCAAGAACT ACGCAAAAATGTTCGGCATAGCCTTTATGGGTGCGCCCATGTCTCAGGTTATTATGAGTCTTTTTGTAAAGCAGGCTCTT GCCGGAGCTGAAGGTGACGCCTGGCGTGCCGCAATGCAGGTGCTGGGTGTTCTGACTCTGGCCTGCCTGGTGGTCGCAGG TTTGCTGGCAAAGGGAAATCCCGAAGATTACAACATGCAGGCCTTTGGCGAAATGCCGCAGAAAAGCGGTAAGCCTGAAA AGGTCTGGGCTATCAGGGAAGCTTTCTCCACCTATCCCATCTGGGGTGCGATCTTCATGTTCCTGACCAGTATGCTGGCA GAGTTCCTCGTATGGACTCAGGTTATCAGCTACTGGACAGCTGATCTTGGCCTGCAGCTGGGCGAAGCCACCAACCTTTA CATTATCATCGGCATCGTAGGCATCTTCTCCATGCCTCTCATGGGTATCGTTGCAGACAAGGCGGTAGCCAGGTCTTCCT GTGAGGCGCAGGGCCGTAAAAAAATGCTCATCTTTGGCCCTATCACCGGCATTGTCGCCTGCGCCATGCTTCTGCTGCAA ACGCAAACAACGTTCTTCCTCGGTGCTATCTCGTGCGTCATCTTCGCAATCTACTGGGCTGTTGTTCCCGGTGGCGTTGT TGGCTACGCAGGCGCCATTTACGGTCGGGCCACCCTCGGCAAGATATGGGGTCTGGCAACGCTGATCGTTATGGGCGTAG GCCCCTTCATCGGCCCGCTGATCGGCGGCTACCTCAAGGACAGCACCGGAAGCTACACATATTCGATTATGTTCGCCCTT GCGTCCTTCGTAGTGTCAGCTTTGCTTGCAGCCAGCCTGCCCATGACAGCAGAGGGCAAGGTTTCCTCTATGGATGATAC GCCCGAGGCTGAAGCCGCAGCCAATTAG
Upstream 100 bases:
>100_bases TCTTTTTGTAAGATTTCATGTGATTGGCATACAATATGTAAATGCAAGAATCACACAAACGCGGAATGGCGTCGTGCCAT GCATTTACAAGGAGAAAGAC
Downstream 100 bases:
>100_bases AGAACTTCCGTATCTGTACGTCCGGCTTCGGTAAATCCTGCGCAGCCGGTCGGCGGTACAAAGCTACAAGGTGGTTACAA GTGGCTCAAGAAAACAATCT
Product: sugar phosphate permease-like protein
Products: NA
Alternate protein names: Sugar Phosphate Permease-Like Protein; Oxalate/Formate Antiporter
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MGKSKNFYGWSVVAASWLAMFCLFGYRATFSILKVPMSADMGWSQAEVTLGYSFMMMFYAIAAFFCGMILDKWGTKPVYF IGAILGASGFYVTSLTQSLYAYYASYGILAGVATGMLWVSSTISIRKWYVGKNYAKMFGIAFMGAPMSQVIMSLFVKQAL AGAEGDAWRAAMQVLGVLTLACLVVAGLLAKGNPEDYNMQAFGEMPQKSGKPEKVWAIREAFSTYPIWGAIFMFLTSMLA EFLVWTQVISYWTADLGLQLGEATNLYIIIGIVGIFSMPLMGIVADKAVARSSCEAQGRKKMLIFGPITGIVACAMLLLQ TQTTFFLGAISCVIFAIYWAVVPGGVVGYAGAIYGRATLGKIWGLATLIVMGVGPFIGPLIGGYLKDSTGSYTYSIMFAL ASFVVSALLAASLPMTAEGKVSSMDDTPEAEAAAN
Sequences:
>Translated_435_residues MGKSKNFYGWSVVAASWLAMFCLFGYRATFSILKVPMSADMGWSQAEVTLGYSFMMMFYAIAAFFCGMILDKWGTKPVYF IGAILGASGFYVTSLTQSLYAYYASYGILAGVATGMLWVSSTISIRKWYVGKNYAKMFGIAFMGAPMSQVIMSLFVKQAL AGAEGDAWRAAMQVLGVLTLACLVVAGLLAKGNPEDYNMQAFGEMPQKSGKPEKVWAIREAFSTYPIWGAIFMFLTSMLA EFLVWTQVISYWTADLGLQLGEATNLYIIIGIVGIFSMPLMGIVADKAVARSSCEAQGRKKMLIFGPITGIVACAMLLLQ TQTTFFLGAISCVIFAIYWAVVPGGVVGYAGAIYGRATLGKIWGLATLIVMGVGPFIGPLIGGYLKDSTGSYTYSIMFAL ASFVVSALLAASLPMTAEGKVSSMDDTPEAEAAAN >Mature_434_residues GKSKNFYGWSVVAASWLAMFCLFGYRATFSILKVPMSADMGWSQAEVTLGYSFMMMFYAIAAFFCGMILDKWGTKPVYFI GAILGASGFYVTSLTQSLYAYYASYGILAGVATGMLWVSSTISIRKWYVGKNYAKMFGIAFMGAPMSQVIMSLFVKQALA GAEGDAWRAAMQVLGVLTLACLVVAGLLAKGNPEDYNMQAFGEMPQKSGKPEKVWAIREAFSTYPIWGAIFMFLTSMLAE FLVWTQVISYWTADLGLQLGEATNLYIIIGIVGIFSMPLMGIVADKAVARSSCEAQGRKKMLIFGPITGIVACAMLLLQT QTTFFLGAISCVIFAIYWAVVPGGVVGYAGAIYGRATLGKIWGLATLIVMGVGPFIGPLIGGYLKDSTGSYTYSIMFALA SFVVSALLAASLPMTAEGKVSSMDDTPEAEAAAN
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46746; Mature: 46615
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 6.0 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKSKNFYGWSVVAASWLAMFCLFGYRATFSILKVPMSADMGWSQAEVTLGYSFMMMFYA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH IAAFFCGMILDKWGTKPVYFIGAILGASGFYVTSLTQSLYAYYASYGILAGVATGMLWVS HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH STISIRKWYVGKNYAKMFGIAFMGAPMSQVIMSLFVKQALAGAEGDAWRAAMQVLGVLTL HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH ACLVVAGLLAKGNPEDYNMQAFGEMPQKSGKPEKVWAIREAFSTYPIWGAIFMFLTSMLA HHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH EFLVWTQVISYWTADLGLQLGEATNLYIIIGIVGIFSMPLMGIVADKAVARSSCEAQGRK HHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KMLIFGPITGIVACAMLLLQTQTTFFLGAISCVIFAIYWAVVPGGVVGYAGAIYGRATLG EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH KIWGLATLIVMGVGPFIGPLIGGYLKDSTGSYTYSIMFALASFVVSALLAASLPMTAEGK HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC VSSMDDTPEAEAAAN CCCCCCCCCCCCCCC >Mature Secondary Structure GKSKNFYGWSVVAASWLAMFCLFGYRATFSILKVPMSADMGWSQAEVTLGYSFMMMFYA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH IAAFFCGMILDKWGTKPVYFIGAILGASGFYVTSLTQSLYAYYASYGILAGVATGMLWVS HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH STISIRKWYVGKNYAKMFGIAFMGAPMSQVIMSLFVKQALAGAEGDAWRAAMQVLGVLTL HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH ACLVVAGLLAKGNPEDYNMQAFGEMPQKSGKPEKVWAIREAFSTYPIWGAIFMFLTSMLA HHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH EFLVWTQVISYWTADLGLQLGEATNLYIIIGIVGIFSMPLMGIVADKAVARSSCEAQGRK HHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KMLIFGPITGIVACAMLLLQTQTTFFLGAISCVIFAIYWAVVPGGVVGYAGAIYGRATLG EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH KIWGLATLIVMGVGPFIGPLIGGYLKDSTGSYTYSIMFALASFVVSALLAASLPMTAEGK HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC VSSMDDTPEAEAAAN CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA