| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is nrdD [H]
Identifier: 78358056
GI number: 78358056
Start: 3000757
End: 3002814
Strand: Reverse
Name: nrdD [H]
Synonym: Dde_3016
Alternate gene names: 78358056
Gene position: 3002814-3000757 (Counterclockwise)
Preceding gene: 78358057
Following gene: 78358055
Centisome position: 80.5
GC content: 55.83
Gene sequence:
>2058_bases ATGCCCAATCACATTCTGAAACGCGACGGCAGACTGGAAACCTGGTCCACAGACCGCATCGCAGGCGCCATCTTTAAATC TCTCAAAGCCAGCGGCATCAAAGATCCCCTGCTTTCCAAGCGCCTTGCCCGCAAGGTTGAGGAAAAACTGAACGACGAAG ACACGCCCGAACAGGAACGCGTGCAGGACATGGTACAGCAGGTGCTGATGGAAGCACGCCTGTACAATGTTGCAGAGCGT TACATTATCTACCGCGAAAAACGCCGCGAGATGCGTTCGCAGGGGCAGGCGTATCTTGATATTTCGCAGATGATCGAAAG CTATCTTGACCGCAGCGACTGGCGCGTGAATGAAAACTCCAACATGGGGCATTCGTTTCAGGGACTGATTCTGCACATGG CAGGTTCGGTACAGGCCCGCTATGTGCTGGAAAAATACCCCGAAGAAATCCGGCAGGCGCATCAGCACGGTTATTTCCAT ATCCATGACCTGTCGTTCGGTCTTGCCGGGTATTGCGCCGGCTGGAGCCTGCGCGACCTGCTGCTTGAAGGATTCAATCT GGCTGGGCGCTGCTCTTCCGCACCTGCCCAGCATTTTGATGCGGCATGCGGACAGATTGTCAACTTTCTGGGCACGCTGC AGAACGAGTGGGCCGGTGCTCAGGCGTTCAACAACGTGGATACCTACCTTGCCCCGTTTGTGCGCAAGGACGGCCTGACC TACAAGCAGGTCAAGCAGCGCATGCAGAACCTTGTGTACAACCTGAACACCACCTCGCGCTGGGGCGGGCAAAGCCCGTT CACCAACTTCACGTTTGACGTGGTGCCCCCGTCGCATATCGCCAACGAACCTGTGATCATCGGCGGCGCTTTCCAGGATT CCACCTACGGCGAATACGCCGAGGAAATGGACATGATCAACCGCGCCTTCATCGAGGTTATGCTGGAAGGCGATGCGGAC GGACGGATATTCTCCTTCCCCATTCCCACGTACAACGTGACCAAGGATTTTCCGTGGGAATCCGAAACCGGTCAGCTGCT TTTGCAGCTCACCGCCAAATACGGCGTGCCGTATTTCCAGAACTTCATCAATTCGGACCTCAACCCCGAAGATGTGCGCT CCATGTGCTGCCGACTGCAGATGGACCTGCGCGAAATACGCAAAAAAACCGGCGGTCTGTTCGGTTCCGGCGACCTTACC GGCTCCATCGGCGTGGTTACGCTGAACCTGCCCAAGCTGGCGTATCTTGCTCACAATGAAGATGATTTCCTTGATCTGGT GACAGAATATGCCGAAATGGCCCGCGACTCGCTGGAATACAAGCGTAAAATGTGCCAGCAGAACCTTGATAACGGCATGT TCCCGTTTTCGCGCCGGTATCTGAAAAACGGCTATGCCGGGCATTTTTCAACCATCGGCCTCATCGGCGGACACGAAGCA TGCCTGAACCTGCTGGGCAAAGGCATTGAAAGTGAAGGCGGGCTGCGTCTGATGACCCGCGTGCTTGACCGCCTGCGCGA ACTGGTGCTGCGTTTTCAGGAAGAGACAGGCCATCTGTACAATCTTGAAGCCACTCCGGGTGAAGGTACCTGCTACCGTC TGGCAAAAATCGACAAGGAACTGTACGAAGATATCCGTACTTCCGGTGAAAGCGTACCGTACTACACCAACTCCACGCTG CTGCCCGTGGGTATTTCCACCGACGTTTTCTACGCGCTGGACCACCAGAACGAGTTGCAGACCCTGTACAACGGCGGTAC GGTATTCCACACCTTCCTCGGCGAGGCCGTGACCGAGCCGGAGTCGGTGAAAAACTTCCTTGTAAAGGCCATGACCAACA CCAAACTTCCGTACATCTCGCTCACTCCGACGTTTTCGGTGTGCAAGGACCACGGCTACCTGAACGGTGAACACTTCAAC TGCCCCACCTGCGGGCAGGATGCAGAAGTGTACACCCGTGTTGTGGGCTACTACCGCCCCGTCAGCCGCTGGAACAAGGG CAAGCAGGAAGAATACAGAGAACGTGCCGAATACATGATGCCGTGCTGCGGCAACTAG
Upstream 100 bases:
>100_bases TCCGGCACGGCAGAATCAAACAACCAGCGACGTACAACGCGTATCCGGTCGTTCCGCGCACCGGATGATGCGCTGTGCTG CGCGCGGAGAGTCATTGCTC
Downstream 100 bases:
>100_bases TGCGGTCCGCTTTCCGGAACTCAGGTTATGATTCTGAATGCCAGTCAGCTTGAAGCCATACGGCAGCGCAATGACGAAGA ACTGCGGAGCGGAACCAGAA
Product: anaerobic ribonucleoside triphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 685; Mature: 684
Protein sequence:
>685_residues MPNHILKRDGRLETWSTDRIAGAIFKSLKASGIKDPLLSKRLARKVEEKLNDEDTPEQERVQDMVQQVLMEARLYNVAER YIIYREKRREMRSQGQAYLDISQMIESYLDRSDWRVNENSNMGHSFQGLILHMAGSVQARYVLEKYPEEIRQAHQHGYFH IHDLSFGLAGYCAGWSLRDLLLEGFNLAGRCSSAPAQHFDAACGQIVNFLGTLQNEWAGAQAFNNVDTYLAPFVRKDGLT YKQVKQRMQNLVYNLNTTSRWGGQSPFTNFTFDVVPPSHIANEPVIIGGAFQDSTYGEYAEEMDMINRAFIEVMLEGDAD GRIFSFPIPTYNVTKDFPWESETGQLLLQLTAKYGVPYFQNFINSDLNPEDVRSMCCRLQMDLREIRKKTGGLFGSGDLT GSIGVVTLNLPKLAYLAHNEDDFLDLVTEYAEMARDSLEYKRKMCQQNLDNGMFPFSRRYLKNGYAGHFSTIGLIGGHEA CLNLLGKGIESEGGLRLMTRVLDRLRELVLRFQEETGHLYNLEATPGEGTCYRLAKIDKELYEDIRTSGESVPYYTNSTL LPVGISTDVFYALDHQNELQTLYNGGTVFHTFLGEAVTEPESVKNFLVKAMTNTKLPYISLTPTFSVCKDHGYLNGEHFN CPTCGQDAEVYTRVVGYYRPVSRWNKGKQEEYRERAEYMMPCCGN
Sequences:
>Translated_685_residues MPNHILKRDGRLETWSTDRIAGAIFKSLKASGIKDPLLSKRLARKVEEKLNDEDTPEQERVQDMVQQVLMEARLYNVAER YIIYREKRREMRSQGQAYLDISQMIESYLDRSDWRVNENSNMGHSFQGLILHMAGSVQARYVLEKYPEEIRQAHQHGYFH IHDLSFGLAGYCAGWSLRDLLLEGFNLAGRCSSAPAQHFDAACGQIVNFLGTLQNEWAGAQAFNNVDTYLAPFVRKDGLT YKQVKQRMQNLVYNLNTTSRWGGQSPFTNFTFDVVPPSHIANEPVIIGGAFQDSTYGEYAEEMDMINRAFIEVMLEGDAD GRIFSFPIPTYNVTKDFPWESETGQLLLQLTAKYGVPYFQNFINSDLNPEDVRSMCCRLQMDLREIRKKTGGLFGSGDLT GSIGVVTLNLPKLAYLAHNEDDFLDLVTEYAEMARDSLEYKRKMCQQNLDNGMFPFSRRYLKNGYAGHFSTIGLIGGHEA CLNLLGKGIESEGGLRLMTRVLDRLRELVLRFQEETGHLYNLEATPGEGTCYRLAKIDKELYEDIRTSGESVPYYTNSTL LPVGISTDVFYALDHQNELQTLYNGGTVFHTFLGEAVTEPESVKNFLVKAMTNTKLPYISLTPTFSVCKDHGYLNGEHFN CPTCGQDAEVYTRVVGYYRPVSRWNKGKQEEYRERAEYMMPCCGN >Mature_684_residues PNHILKRDGRLETWSTDRIAGAIFKSLKASGIKDPLLSKRLARKVEEKLNDEDTPEQERVQDMVQQVLMEARLYNVAERY IIYREKRREMRSQGQAYLDISQMIESYLDRSDWRVNENSNMGHSFQGLILHMAGSVQARYVLEKYPEEIRQAHQHGYFHI HDLSFGLAGYCAGWSLRDLLLEGFNLAGRCSSAPAQHFDAACGQIVNFLGTLQNEWAGAQAFNNVDTYLAPFVRKDGLTY KQVKQRMQNLVYNLNTTSRWGGQSPFTNFTFDVVPPSHIANEPVIIGGAFQDSTYGEYAEEMDMINRAFIEVMLEGDADG RIFSFPIPTYNVTKDFPWESETGQLLLQLTAKYGVPYFQNFINSDLNPEDVRSMCCRLQMDLREIRKKTGGLFGSGDLTG SIGVVTLNLPKLAYLAHNEDDFLDLVTEYAEMARDSLEYKRKMCQQNLDNGMFPFSRRYLKNGYAGHFSTIGLIGGHEAC LNLLGKGIESEGGLRLMTRVLDRLRELVLRFQEETGHLYNLEATPGEGTCYRLAKIDKELYEDIRTSGESVPYYTNSTLL PVGISTDVFYALDHQNELQTLYNGGTVFHTFLGEAVTEPESVKNFLVKAMTNTKLPYISLTPTFSVCKDHGYLNGEHFNC PTCGQDAEVYTRVVGYYRPVSRWNKGKQEEYRERAEYMMPCCGN
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glycine radical domain [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=753, Percent_Identity=24.8339973439575, Blast_Score=151, Evalue=1e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 78037; Mature: 77906
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: PS51161 ATP_CONE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNHILKRDGRLETWSTDRIAGAIFKSLKASGIKDPLLSKRLARKVEEKLNDEDTPEQER CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH VQDMVQQVLMEARLYNVAERYIIYREKRREMRSQGQAYLDISQMIESYLDRSDWRVNENS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCEECCCC NMGHSFQGLILHMAGSVQARYVLEKYPEEIRQAHQHGYFHIHDLSFGLAGYCAGWSLRDL CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCHHHHH LLEGFNLAGRCSSAPAQHFDAACGQIVNFLGTLQNEWAGAQAFNNVDTYLAPFVRKDGLT HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCC YKQVKQRMQNLVYNLNTTSRWGGQSPFTNFTFDVVPPSHIANEPVIIGGAFQDSTYGEYA HHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEECCCCHHHCCCCEEEECCCCCCCHHHHH EEMDMINRAFIEVMLEGDADGRIFSFPIPTYNVTKDFPWESETGQLLLQLTAKYGVPYFQ HHHHHHHHHHHHHHEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHH NFINSDLNPEDVRSMCCRLQMDLREIRKKTGGLFGSGDLTGSIGVVTLNLPKLAYLAHNE HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEECCC DDFLDLVTEYAEMARDSLEYKRKMCQQNLDNGMFPFSRRYLKNGYAGHFSTIGLIGGHEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEECCCHHH CLNLLGKGIESEGGLRLMTRVLDRLRELVLRFQEETGHLYNLEATPGEGTCYRLAKIDKE HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH LYEDIRTSGESVPYYTNSTLLPVGISTDVFYALDHQNELQTLYNGGTVFHTFLGEAVTEP HHHHHHCCCCCCCEEECCEEEEECCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHCCH ESVKNFLVKAMTNTKLPYISLTPTFSVCKDHGYLNGEHFNCPTCGQDAEVYTRVVGYYRP HHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH VSRWNKGKQEEYRERAEYMMPCCGN HHHHCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure PNHILKRDGRLETWSTDRIAGAIFKSLKASGIKDPLLSKRLARKVEEKLNDEDTPEQER CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH VQDMVQQVLMEARLYNVAERYIIYREKRREMRSQGQAYLDISQMIESYLDRSDWRVNENS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCEECCCC NMGHSFQGLILHMAGSVQARYVLEKYPEEIRQAHQHGYFHIHDLSFGLAGYCAGWSLRDL CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCHHHHH LLEGFNLAGRCSSAPAQHFDAACGQIVNFLGTLQNEWAGAQAFNNVDTYLAPFVRKDGLT HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCC YKQVKQRMQNLVYNLNTTSRWGGQSPFTNFTFDVVPPSHIANEPVIIGGAFQDSTYGEYA HHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEECCCCHHHCCCCEEEECCCCCCCHHHHH EEMDMINRAFIEVMLEGDADGRIFSFPIPTYNVTKDFPWESETGQLLLQLTAKYGVPYFQ HHHHHHHHHHHHHHEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHH NFINSDLNPEDVRSMCCRLQMDLREIRKKTGGLFGSGDLTGSIGVVTLNLPKLAYLAHNE HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEECCC DDFLDLVTEYAEMARDSLEYKRKMCQQNLDNGMFPFSRRYLKNGYAGHFSTIGLIGGHEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEECCCHHH CLNLLGKGIESEGGLRLMTRVLDRLRELVLRFQEETGHLYNLEATPGEGTCYRLAKIDKE HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH LYEDIRTSGESVPYYTNSTLLPVGISTDVFYALDHQNELQTLYNGGTVFHTFLGEAVTEP HHHHHHCCCCCCCEEECCEEEEECCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHCCH ESVKNFLVKAMTNTKLPYISLTPTFSVCKDHGYLNGEHFNCPTCGQDAEVYTRVVGYYRP HHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH VSRWNKGKQEEYRERAEYMMPCCGN HHHHCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]